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== INCLAN ==

* [[INCLAN]] (INteractive Command LANguage)

== CYANA Scripts ==

<div style="column-count:4;-moz-column-count:4;-webkit-column-count:4">
* [[CYANA script: cyanaclean|cyanaclean]]
* [[CYANA script: cyana|cyana]]
* [[CYANA script: cyanafilter|cyanafilter]]
* [[CYANA script: cyanajob|cyanajob]]
* [[CYANA script: cyanatable|cyanatable]]
</div>

== CYANA Commands ==

* [[CYANA Commands]]
* [[CYANA Commands#CYANA_Macros|CYANA Macros]]

== CYANA Functions ==

* [[CYANA functions]]

== CYANA Variables ==

* [[CYANA variables]]

== Selections ==

<div style="column-count:4;-moz-column-count:4;-webkit-column-count:4">
* [[Selection rules]]
* [[Atom selection]]
* [[Angle selection]]
* [[Peak selection]]
* [[Distance restraint selection]]
* [[Scalar coupling selection]]
* [[Residual dipolar coupling selection]]
* [[Pseudocontact shift selection]]
* [[Structure selection]]
</div>

== Input files ==

<div style="column-count:4;-moz-column-count:4;-webkit-column-count:4">
* [[Residue library file]] (.lib)
* [[Sequence file]] (.seq)
* [[Distance restraint file]] (.upl, .lol)
* [[Torsion angle restraint file]] (.aco)
* [[Residual dipolar coupling restraint file]] (.rdc)
* [[Pseudocontact shift restraint file]] (.pcs)
* [[DG Cartesian coordinate file]] (.cor)
* [[PDB coordinate file]] (.pdb)
* [[Torsion angle file]] (.ang)
* [[XEASY chemical shift list file]] (.prot)
* [[BMRB chemical shift list file]] (.bmrb)
* [[XEASY peak list file]] (.peaks)
* [[NMRView peak list file]] (.xpk)
</div>

== Algorithms ==

<div style="column-count:4;-moz-column-count:4;-webkit-column-count:4">
* [[Coordinate generation]]
* [[Target function]]
* [[Torsion angle dynamics]]
* [[Momenta compensation]]
* [[Simulated annealing]]
</div>

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