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Atoms calibrate - Revision history
2026-05-13T20:12:48Z
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https://cyana.org/w/index.php?title=Atoms_calibrate&diff=3669&oldid=prev
Admin: 1 revision
2009-01-28T18:18:38Z
<p>1 revision</p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 20:18, 28 January 2009</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Parameters ==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Parameters ==</div></td></tr>
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https://cyana.org/w/index.php?title=Atoms_calibrate&diff=2867&oldid=prev
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2009-01-28T18:12:26Z
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 20:12, 28 January 2009</td>
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https://cyana.org/w/index.php?title=Atoms_calibrate&diff=2055&oldid=prev
Admin: 1 revision
2009-01-28T17:25:55Z
<p>1 revision</p>
<p><b>New page</b></p><div><br />
== Parameters ==<br />
<br />
; selection=''string'': (default: ''none'')<br />
; peaklists=''integer range'': (default: 1..1)<br />
; constant=''real'': (default: -1.0)<br />
; dref=''real'': (default: 3.4)<br />
; volcut=''real'': (default: 0.66)<br />
<br />
== Description ==<br />
<br />
Command to set the calibration constant of the atoms matched by<br />
the selection ''string'' for the chosen ''peaklists''. By default, the<br />
selection made in the most recent '''atoms select''' command is used,<br />
or all atoms if no selection has been made so far. The calibration<br />
constant can either be set explicitly to a given positive ''constant'',<br />
or it can be determined such as to achieve a median upper distance<br />
limit of approximately ''dref'' Angstrom for the peaks assigned to<br />
selected atoms in the ''peaklists''. Only assignments to which a<br />
fraction of the total peak volume greater than the cutoff ''volcut''<br />
is attributed are included when computing the median. This command<br />
sets the calibration constant of atoms, which may later be used to<br />
obtain upper distance limit restraints from assigned NOESY peaks by<br />
the command '''peaks calibrate'''.<br />
<br />
== See also ==<br />
<br />
* [[peaks calibrate]]<br />
* [[calibrate]]<br />
* [[caliba]]</div>
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