https://cyana.org/w/index.php?action=history&feed=atom&title=Atoms_glomsa
Atoms glomsa - Revision history
2026-04-25T00:56:01Z
Revision history for this page on the wiki
MediaWiki 1.45.1
https://cyana.org/w/index.php?title=Atoms_glomsa&diff=3673&oldid=prev
Admin: 1 revision
2009-01-28T18:18:38Z
<p>1 revision</p>
<table style="background-color: #fff; color: #202122;" data-mw="interface">
<col class="diff-marker" />
<col class="diff-content" />
<col class="diff-marker" />
<col class="diff-content" />
<tr class="diff-title" lang="en">
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 20:18, 28 January 2009</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l1">Line 1:</td>
<td colspan="2" class="diff-lineno">Line 1:</td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>= <del style="font-weight: bold; text-decoration: none;">atoms glomsa </del>=</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>= <ins style="font-weight: bold; text-decoration: none;">atoms_glomsa </ins>=</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> </div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> </div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Parameters ==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Parameters ==</div></td></tr>
</table>
Admin
https://cyana.org/w/index.php?title=Atoms_glomsa&diff=2871&oldid=prev
Admin: 1 revision
2009-01-28T18:12:26Z
<p>1 revision</p>
<table style="background-color: #fff; color: #202122;" data-mw="interface">
<col class="diff-marker" />
<col class="diff-content" />
<col class="diff-marker" />
<col class="diff-content" />
<tr class="diff-title" lang="en">
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 20:12, 28 January 2009</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l1">Line 1:</td>
<td colspan="2" class="diff-lineno">Line 1:</td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> </div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">= atoms glomsa =</ins></div></td></tr>
<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"> </ins></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Parameters ==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Parameters ==</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr>
</table>
Admin
https://cyana.org/w/index.php?title=Atoms_glomsa&diff=2059&oldid=prev
Admin: 1 revision
2009-01-28T17:25:55Z
<p>1 revision</p>
<p><b>New page</b></p><div><br />
== Parameters ==<br />
<br />
; selection=''string'': (default: ''none'')<br />
; cutoff=''real'': (default: 0.4)<br />
; threshold=''real'': (default: 0.4)<br />
; fr <br />
; single <br />
<br />
== Description ==<br />
<br />
The '''atoms glomsa''' command searches for stereospecific assignments of<br />
diastereotopic atoms matched by the selection ''string'' by analyzing<br />
the distances that are restrained by an upper distance limit in the<br />
selected conformers. The command provides the functionality of the<br />
former separate program GLOMSA ("GLObal Method for Stereospecific<br />
Assignments"). By default, the selection made in the most recent '''atoms<br />
select''' command is used, or all diastereotopic atoms if no selection<br />
has been made so far. Stereospecific assignment proposals are reported<br />
for those diastereotopic pairs for which the difference between the<br />
upper bounds from the two diastereotopic atoms to a third atom exceeds<br />
the ''cutoff'', given in Angstrom, and the corresponding average distance<br />
difference in the selected conformers is larger than the ''threshold'',<br />
also given in Angstrom, in at least the chosen ''fraction'', given in<br />
percent, of the selected conformers. Single distance restraints from<br />
one but not the other of two diastereotopic partners to a third atom<br />
can be considered by setting the option '''single'''. The '''atoms glomsa'''<br />
command reports proposals for stereospecific assignments but does<br />
not fix the stereospecific assignment as the '''atoms stereo''' command.<br />
<br />
Further reading:<br />
<br />
* Guntert et al. J. Mol. Biol. 217, 517-530 (1991).<br />
* Guntert et al. J. Mol. Biol. 217, 531-540 (1991).<br />
<br />
== See also ==<br />
<br />
* [[atoms stereo]]<br />
* [[stereoassign]]<br />
* [[habas]]</div>
Admin