CYANA Command: angles set - Revision history

Miki at 11:18, 12 January 2010

2010-01-12T11:18:24Z

← Older revision		Revision as of 13:18, 12 January 2010
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	== Parameters ==		== Parameters ==

	; selection=<string> (default: <blank>)		; selection=''string'' :(default: <blank>)
	; value=<string> (default: <blank>)		; value=''string'' :(default: <blank>)
	; free		; free
	; fixed		; fixed
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	== Description ==		== Description ==

	Command to set properties of the torsion angles that match the		Command to set properties of the torsion angles that match the selection ''string''. By default, the selection made in the most recent
	selection <string>. By default, the selection made in the most recent		[[CYANA Commands: angles select\|'''angles select''']]' command is used, or all angles if no selection has been made so far.
	'angles select' command is used, or all angles if no selection has
	been made so far.

	The value of a torsion angle can be set with the parameter 'value'. The		The value of a torsion angle can be set with the parameter '''value'''. The ''string'' is a real number or a real expression that may contain the
	<string> is a real number or a real expression that may contain the		symbol '''value''' to represent the current value of the torsion angle.
	symbol 'value' to represent the current value of the torsion angle.
	Torsion angle values are given in degrees.		Torsion angle values are given in degrees.

	Torsion angles are fixed to their current value if the option 'fixed'		Torsion angles are fixed to their current value if the option '''fixed''' is given. Fixed torsion angles are non-rotatable and cannot be changed
	is given. Fixed torsion angles are non-rotatable and cannot be changed
	during minimization or torsion angle dynamics.		during minimization or torsion angle dynamics.

	Torsion angles are made rotatable if the option 'free' is given. Free		Torsion angles are made rotatable if the option '''free''' is given. Free torsion angles can be changed during minimization or torsion angle
	torsion angles can be changed during minimization or torsion angle
	dynamics.		dynamics.

	Initially, all torsion angles defined in the library are rotatable		Initially, all torsion angles defined in the library are rotatable except for those called OMEGA, which are typically used for the
	except for those called OMEGA, which are typically used for the		peptide bonds in polypeptides. OMEGA angles are fixed to 180 degrees ('''trans'''). Optionally, the OMEGA angle preceding a given amino acid
	peptide bonds in polypeptides. OMEGA angles are fixed to 180 degrees		residue can be fixed to 0 degrees ('''cis''') by a preceding the residue name in the sequence (.seq) file by a lowercase 'c'.
	(trans). Optionally, the OMEGA angle preceding a given amino acid
	residue can be fixed to 0 degrees (cis) by a preceding the residue
	name in the sequence (.seq) file by a lowercase 'c'.

Miki at 10:03, 12 January 2010

2010-01-12T10:03:31Z

@@ Line 1: / Line 1: @@
 == Parameters ==
-; selection=''[[angle selection]]'': (default: ''none'')
+; selection=<string>             (default: <blank>)
-; value=''string'': (default: ''none'')
+; value=<string>                 (default: <blank>)
 ; free
 ; fixed
 ; rigid
 == Description ==
-All selected angles are set to the given '''value''', given in degrees.
+Command to set properties of the torsion angles that match the

Masayo: /* Parameters */

2009-08-13T09:45:30Z

Parameters

← Older revision		Revision as of 11:45, 13 August 2009
Line 2:		Line 2:
	== Parameters ==		== Parameters ==

	; selection=''~~string~~'': (default: ''none'')		; selection=''[[angle selection]]'': (default: ''none'')
	; value=''string'': (default: ''none'')		; value=''string'': (default: ''none'')
	; free		; free
	; fixed		; fixed
	; rigid		; rigid

	== Description ==		== Description ==

	All selected angles are set to the given '''value''', given in degrees.		All selected angles are set to the given '''value''', given in degrees.

Admin: /* Description */

2009-08-05T13:04:35Z

Description

← Older revision		Revision as of 15:04, 5 August 2009
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	== Description ==		== Description ==

	~~Command to set properties of the torsion~~ angles ~~that match the~~		All selected angles are set to the given '''value''', given in degrees.
	~~selection ''string''. By default, the selection made in the most recent~~
	~~'''angles select''' command is used, or all angles if no selection has~~
	~~been made so far.~~

	~~The value of a torsion angle can be~~ set ~~with the parameter '''value'''. The~~
	~~''string'' is a real number or a real expression that may contain the~~
	~~symbol '''value'''~~ to ~~represent~~ the ~~current value of the torsion angle.~~
	~~Torsion angle values are~~ given ~~in degrees.~~

	~~Torsion angles are fixed to their current value if the option~~ '''~~fixed~~'''
	is given~~. Fixed torsion angles are non-rotatable and cannot be changed~~
	~~during minimization or torsion angle dynamics.~~

	~~Torsion angles are made rotatable if the option '''free''' is given. Free~~
	~~torsion angles can be changed during minimization or torsion angle~~
	~~dynamics.~~

	~~Initially, all torsion angles defined in the library are rotatable~~
	~~except for those called OMEGA, which are typically used for the~~
	~~peptide bonds~~ in ~~polypeptides. OMEGA angles are fixed to 180~~ degrees
	~~(trans). Optionally, the OMEGA angle preceding a given amino acid~~
	~~residue can be fixed to 0 degrees (cis) by a preceding the residue~~
	~~name in the sequence (.seq) file by a lowercase '''c'''~~.

Admin: 1 revision

2009-01-29T11:26:54Z

1 revision

New page

== Parameters ==

; selection=''string'': (default: ''none'')
; value=''string'': (default: ''none'')
; free
; fixed
; rigid

== Description ==

Command to set properties of the torsion angles that match the
selection ''string''. By default, the selection made in the most recent
'''angles select''' command is used, or all angles if no selection has
been made so far.

The value of a torsion angle can be set with the parameter '''value'''. The
''string'' is a real number or a real expression that may contain the
symbol '''value''' to represent the current value of the torsion angle.
Torsion angle values are given in degrees.

Torsion angles are fixed to their current value if the option '''fixed'''
is given. Fixed torsion angles are non-rotatable and cannot be changed
during minimization or torsion angle dynamics.

Torsion angles are made rotatable if the option '''free''' is given. Free
torsion angles can be changed during minimization or torsion angle
dynamics.

Initially, all torsion angles defined in the library are rotatable
except for those called OMEGA, which are typically used for the
peptide bonds in polypeptides. OMEGA angles are fixed to 180 degrees
(trans). Optionally, the OMEGA angle preceding a given amino acid
residue can be fixed to 0 degrees (cis) by a preceding the residue
name in the sequence (.seq) file by a lowercase '''c'''.