CYANA Command: atoms calibrate - Revision history

Masayo: /* Parameters */

2009-08-13T09:48:11Z

Parameters

← Older revision		Revision as of 11:48, 13 August 2009
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	== Parameters ==		== Parameters ==

	; selection=''~~string~~'': (default: ''none'')		; selection=''[[atom selection]]'': (default: ''none'')
	; peaklists=''integer range'': (default: 1..1)		; peaklists=''integer range'': (default: 1..1)
	; constant=''real'': (default: -1.0)		; constant=''real'': (default: -1.0)

Admin: /* Description */

2009-08-06T11:51:45Z

Description

← Older revision		Revision as of 13:51, 6 August 2009
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	== Description ==		== Description ==

	Command to set the calibration constant of the atoms matched by the given ''selection'' for the chosen ''peaklists''. By default, the selection made in the most recent 'atoms select' command is used, or all atoms if no selection has been made so far. The calibration constant can either be set explicitly to a given positive ''constant'', or it can be determined such as to achieve a median upper distance limit of approximately ''dref'' Å for the peaks assigned to selected atoms in the ''peaklists''. Only assignments to which a fraction of the total peak volume greater than the cutoff ''volcut'' is attributed are included when computing the median. This command sets the calibration constant of atoms, which may later be used to obtain upper distance limit restraints from assigned NOESY peaks by the command [[CYANA Commands: peaks calibrate\|''peaks calibrate'']].		Command to set the calibration constant of the atoms matched by the given ''selection'' for the chosen ''peaklists''. By default, the selection made in the most recent 'atoms select' command is used, or all atoms if no selection has been made so far. The calibration constant can either be set explicitly to a given positive ''constant'', or it can be determined such as to achieve a median upper distance limit of approximately ''dref'' Å for the peaks assigned to selected atoms in the ''peaklists''. Only assignments to which a fraction of the total peak volume greater than the cutoff ''volcut'' is attributed are included when computing the median. This command sets the calibration constant of atoms, which may later be used to obtain upper distance limit restraints from assigned NOESY peaks by the command [[CYANA Commands: peaks calibrate\|'''peaks calibrate''']].

	== See also ==		== See also ==

Admin: /* See also */

2009-08-06T11:51:29Z

Admin: /* Description */

2009-08-06T11:50:36Z

Description

← Older revision		Revision as of 13:50, 6 August 2009
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	Command to set the calibration constant of the atoms matched by the given ''selection'' for the chosen ''peaklists''. By default, the selection made in the most recent 'atoms select' command is used, or all atoms if no selection has been made so far. The calibration constant can either be set explicitly to a given positive ''constant'', or it can be determined such as to achieve a median upper distance limit of approximately ''dref'' Å for the peaks assigned to selected atoms in the ''peaklists''. Only assignments to which a fraction of the total peak volume greater than the cutoff ''volcut'' is attributed are included when computing the median. This command sets the calibration constant of atoms, which may later be used to obtain upper distance limit restraints from assigned NOESY peaks by the command [[CYANA Commands: peaks calibrate\|''peaks calibrate'']].		Command to set the calibration constant of the atoms matched by the given ''selection'' for the chosen ''peaklists''. By default, the selection made in the most recent 'atoms select' command is used, or all atoms if no selection has been made so far. The calibration constant can either be set explicitly to a given positive ''constant'', or it can be determined such as to achieve a median upper distance limit of approximately ''dref'' Å for the peaks assigned to selected atoms in the ''peaklists''. Only assignments to which a fraction of the total peak volume greater than the cutoff ''volcut'' is attributed are included when computing the median. This command sets the calibration constant of atoms, which may later be used to obtain upper distance limit restraints from assigned NOESY peaks by the command [[CYANA Commands: peaks calibrate\|''peaks calibrate'']].
	~~See also: [[CYANA Commands: peaks calibrate\|''peaks calibrate'']], [[CYANA Commands: calibrate\|''calibrate'']], [[CYANA Macro: caliba\|'''caliba''']]~~

	== See also ==		== See also ==

Admin: /* Description */

2009-08-06T11:50:04Z

Description

← Older revision		Revision as of 13:50, 6 August 2009
Line 10:		Line 10:
	== Description ==		== Description ==

	Command to set the calibration constant of the atoms matched by		Command to set the calibration constant of the atoms matched by the given ''selection'' for the chosen ''peaklists''. By default, the selection made in the most recent 'atoms select' command is used, or all atoms if no selection has been made so far. The calibration constant can either be set explicitly to a given positive ''constant'', or it can be determined such as to achieve a median upper distance limit of approximately ''dref'' Å for the peaks assigned to selected atoms in the ''peaklists''. Only assignments to which a fraction of the total peak volume greater than the cutoff ''volcut'' is attributed are included when computing the median. This command sets the calibration constant of atoms, which may later be used to obtain upper distance limit restraints from assigned NOESY peaks by the command [[CYANA Commands: peaks calibrate\|''peaks calibrate'']].
	the ~~selection~~ ''~~string~~'' for the chosen ''peaklists''. By default, the		See also: [[CYANA Commands: peaks calibrate\|''peaks calibrate'']], [[CYANA Commands: calibrate\|''calibrate'']], [[CYANA Macro: caliba\|'''caliba''']]
	selection made in the most recent '''atoms select''' command is used,
	or all atoms if no selection has been made so far. The calibration
	constant can either be set explicitly to a given positive ''constant'',
	or it can be determined such as to achieve a median upper distance
	limit of approximately ''dref'' ~~Angstrom~~ for the peaks assigned to
	selected atoms in the ''peaklists''. Only assignments to which a
	fraction of the total peak volume greater than the cutoff ''volcut''
	is attributed are included when computing the median. This command
	sets the calibration constant of atoms, which may later be used to
	obtain upper distance limit restraints from assigned NOESY peaks by
	the command '''peaks calibrate'''.

	== See also ==		== See also ==

Admin: 1 revision

2009-01-29T11:26:54Z

1 revision

New page

== Parameters ==

; selection=''string'': (default: ''none'')
; peaklists=''integer range'': (default: 1..1)
; constant=''real'': (default: -1.0)
; dref=''real'': (default: 3.4)
; volcut=''real'': (default: 0.66)

== Description ==

Command to set the calibration constant of the atoms matched by
the selection ''string'' for the chosen ''peaklists''. By default, the
selection made in the most recent '''atoms select''' command is used,
or all atoms if no selection has been made so far. The calibration
constant can either be set explicitly to a given positive ''constant'',
or it can be determined such as to achieve a median upper distance
limit of approximately ''dref'' Angstrom for the peaks assigned to
selected atoms in the ''peaklists''. Only assignments to which a
fraction of the total peak volume greater than the cutoff ''volcut''
is attributed are included when computing the median. This command
sets the calibration constant of atoms, which may later be used to
obtain upper distance limit restraints from assigned NOESY peaks by
the command '''peaks calibrate'''.

== See also ==

* [[peaks calibrate]]
* [[calibrate]]
* [[caliba]]

← Older revision		Revision as of 13:51, 6 August 2009
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	== See also ==		== See also ==

	* [[peaks calibrate]]		* [[CYANA Commands: peaks calibrate\|'''peaks calibrate''']]
	* [[calibrate]]		* [[CYANA Commands: calibrate\|'''calibrate''']]
	* [[caliba]]		* [[CYANA Macro: caliba\|'''caliba''']]