CYANA Command: distances calculate - Revision history

Masayo: /* Parameters */

2009-08-13T11:48:28Z

Parameters

← Older revision		Revision as of 13:48, 13 August 2009
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	== Parameters ==		== Parameters ==

	; first=''~~string~~'': (required)		; first=''[[atom selection]]'': (required)
	; second=''~~string~~'': (required)		; second=''[[atom selection]]'': (required)
	; levels=''integer range'': (default: -99999..99999)		; levels=''integer range'': (default: -99999..99999)
	; distance=''real range'': (default: 0.0..99999.9)		; distance=''real range'': (default: 0.0..99999.9)

Masayo: /* Parameters */

2009-08-12T13:14:09Z

Parameters

← Older revision		Revision as of 15:14, 12 August 2009
Line 2:		Line 2:
	== Parameters ==		== Parameters ==

	; first=''string'' (required)		; first=''string'': (required)
	; second=''string'' (required)		; second=''string'': (required)
	; levels=''integer range'': (default: -99999..99999)		; levels=''integer range'': (default: -99999..99999)
	; distance=''real range'': (default: 0.0..99999.9)		; distance=''real range'': (default: 0.0..99999.9)

Masayo: /* Description */

2009-08-07T12:30:07Z

Description

@@ Line 9: / Line 9: @@
 == Description ==
-This command lists interatomic distances between atoms selected by
+This command lists interatomic distances between atoms selected by the 'first' and 'second' atom selection. Only those atom pairs with a residue number difference in the given range of ''levels'' are considered. If structures have been read and selected, then only those atom pairs with a corresponding average distance in the given ''distance'' range are considered.<br>
-the '''first''' and '''second''' atom selection. Only those atom pairs with
+The command reports the average distance, its standard deviation, minimal value and maximal value in the selected structures, as well as the number of structures in which the distance lies in the given ''distance'' range. For each selected structure, the distance value is represented schematically by a '-' sign if the distance is shorter than the lower bound of the distance range, by a '*' sign if it is within the bounds of the 'distance' range, or by a '+' sign if it is longer than the upper bound of the ''distance'' range.

Admin: 1 revision

2009-01-29T11:26:55Z

1 revision

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== Parameters ==

; first=''string'' (required)
; second=''string'' (required)
; levels=''integer range'': (default: -99999..99999)
; distance=''real range'': (default: 0.0..99999.9)

== Description ==

This command lists interatomic distances between atoms selected by
the '''first''' and '''second''' atom selection. Only those atom pairs with
a residue number difference in the range defined by the '''levels'''
parameter are considered. If structures have been read and selected,
then only those atom pairs with a corresponding average distance in
the range defined by the '''distance''' parameter are considered.

The command reports the average distance, its standard deviation,
minimal value and maximal value in the selected structures, as well
as the number of structures in which the distance lies in the range
defined by the '''distance''' parameter. For each selected structure,
the distance value is represented schematically by a '''-''' sign if the
distance is shorter than the lower bound of the '''distance''' range, by a
'''*''' sign if it is within the bounds of the '''distance''' range, or by a
'''+''' sign if it is longer than the upper bound of the '''distance''' range.