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CYANA Command: enoe sig - Revision history
2026-04-19T21:33:16Z
Revision history for this page on the wiki
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https://cyana.org/w/index.php?title=CYANA_Command:_enoe_sig&diff=9686&oldid=prev
Dean at 16:08, 11 September 2019
2019-09-11T16:08:46Z
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 18:08, 11 September 2019</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>; opt=''integer'': (default: ''1'')</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>; opt=''integer'': (default: ''1'')</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">; plot =''string'': (default: ''izPlot'')</del></div></td><td colspan="2" class="diff-side-added"></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Description ==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Description ==</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>This command fits the <del style="font-weight: bold; text-decoration: none;">diagonal decays </del>to obtain the <del style="font-weight: bold; text-decoration: none;">auto-</del>relaxation <del style="font-weight: bold; text-decoration: none;">(rho) </del>values <del style="font-weight: bold; text-decoration: none;"> and back-predicted diagonal intensities, I(0) </del>values. </div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>This command fits the <ins style="font-weight: bold; text-decoration: none;">the cross peak buildups </ins>to obtain the <ins style="font-weight: bold; text-decoration: none;">experimental cross </ins>relaxation values values. </div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>The parameter '''opt''' <del style="font-weight: bold; text-decoration: none;">specifies if </del>the <del style="font-weight: bold; text-decoration: none;">spin type specific median and standard deviation of auo-relaxation </del>(opt=<del style="font-weight: bold; text-decoration: none;">2</del>) <del style="font-weight: bold; text-decoration: none;">values and back</del>-<del style="font-weight: bold; text-decoration: none;">predicted diagonal intensities, I(0) values </del>(opt=<del style="font-weight: bold; text-decoration: none;">3) are calculated are written to file. With the back-predicted diagonal intensities there is a pdf file generated containing plots of the fitted intensities divided according to classes with the mean (green line) and std deviation (red line</del>).</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>The parameter '''opt''' <ins style="font-weight: bold; text-decoration: none;">allows to fit </ins>the <ins style="font-weight: bold; text-decoration: none;">original experimental cross peak intensities </ins>(opt=<ins style="font-weight: bold; text-decoration: none;">1</ins>) <ins style="font-weight: bold; text-decoration: none;">or the spin</ins>-<ins style="font-weight: bold; text-decoration: none;">diffusion corrected ones </ins>(opt=<ins style="font-weight: bold; text-decoration: none;">2</ins>).</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>In the case of single <del style="font-weight: bold; text-decoration: none;">mixing time measurements</del>, <del style="font-weight: bold; text-decoration: none;">the auo</del>-<del style="font-weight: bold; text-decoration: none;">relaxation value are omitted and the back-predicted diagonal intensities, I</del>(<del style="font-weight: bold; text-decoration: none;">0</del>) <del style="font-weight: bold; text-decoration: none;">values are replaced by the diagonal intensities values measured at </del>the <del style="font-weight: bold; text-decoration: none;">specific mixing time</del>.</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>In the case of <ins style="font-weight: bold; text-decoration: none;">a </ins>single <ins style="font-weight: bold; text-decoration: none;">point measurement</ins>, <ins style="font-weight: bold; text-decoration: none;">sigma is obtained from sinh^</ins>-<ins style="font-weight: bold; text-decoration: none;">1 = log(sqrt</ins>(<ins style="font-weight: bold; text-decoration: none;">z^2+1) + z</ins>)<ins style="font-weight: bold; text-decoration: none;">, where z corresponds to </ins>the <ins style="font-weight: bold; text-decoration: none;">experimental intensity</ins>.</div></td></tr>
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Dean
https://cyana.org/w/index.php?title=CYANA_Command:_enoe_sig&diff=9684&oldid=prev
Dean: Created page with "back to complete commands list == Parameters == ; opt=''integer'': (default: ''1'') ; plot =''string'': (default: ''izPlot'') == Description == This com..."
2019-09-11T16:02:25Z
<p>Created page with "<a href="/wiki/CYANA_Commands" title="CYANA Commands">back to complete commands list</a> == Parameters == ; opt=''integer'': (default: ''1'') ; plot =''string'': (default: ''izPlot'') == Description == This com..."</p>
<p><b>New page</b></p><div>[[CYANA Commands|back to complete commands list]]<br />
<br />
== Parameters ==<br />
<br />
; opt=''integer'': (default: ''1'')<br />
; plot =''string'': (default: ''izPlot'')<br />
<br />
== Description ==<br />
<br />
This command fits the diagonal decays to obtain the auto-relaxation (rho) values and back-predicted diagonal intensities, I(0) values. <br />
<br />
The parameter '''opt''' specifies if the spin type specific median and standard deviation of auo-relaxation (opt=2) values and back-predicted diagonal intensities, I(0) values (opt=3) are calculated are written to file. With the back-predicted diagonal intensities there is a pdf file generated containing plots of the fitted intensities divided according to classes with the mean (green line) and std deviation (red line).<br />
<br />
In the case of single mixing time measurements, the auo-relaxation value are omitted and the back-predicted diagonal intensities, I(0) values are replaced by the diagonal intensities values measured at the specific mixing time.</div>
Dean