CYANA Command: library replace - Revision history

Masayo: /* Parameters */

2009-08-13T11:55:35Z

Parameters

← Older revision		Revision as of 13:55, 13 August 2009
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	== Parameters ==		== Parameters ==

	; selection=~~''string''~~: (default: ''none'')		; selection=[[atom selection]]: (default: ''none'')

	== Description ==		== Description ==

Masayo: /* Description */

2009-08-12T10:42:48Z

Description

← Older revision		Revision as of 12:42, 12 August 2009
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	== Description ==		== Description ==

	Replaces for the atoms matched by the ''selection'' the coordinates of the corresponding residue entry in the residue library entry by the coordinates of the current structure. By default, the selection made in the most recent '''atoms select''' command is used, or all atoms if no selection has been made so far.		Replaces for the atoms matched by the ''selection'' the coordinates of the corresponding residue entry in the residue library entry by the coordinates of the current structure. By default, the selection made in the most recent [[CYANA Commands: atoms select\|'''atoms select''']] command is used, or all atoms if no selection has been made so far.
	The coordinate replacement takes place only for residues for which the atom selection includes all atoms of a residue entry in the residue library, including possible “overlap” atoms with the preceding and following residue. For instance, the overlap atoms of an amino acid residue comprise the atoms C and O of the preceding residue, and N of the following residue. The coordinates of the first matching residue in the current structure are used. Replace selected coordinates in the library with those of the current structure.		The coordinate replacement takes place only for residues for which the atom selection includes all atoms of a residue entry in the residue library, including possible “overlap” atoms with the preceding and following residue. For instance, the overlap atoms of an amino acid residue comprise the atoms C and O of the preceding residue, and N of the following residue. The coordinates of the first matching residue in the current structure are used. Replace selected coordinates in the library with those of the current structure.

Masayo: /* Description */

2009-08-07T08:39:37Z

Description

@@ Line 6: / Line 6: @@
 == Description ==
-This command replaces for the atoms matched by the selection ''string''
+Replaces for the atoms matched by the ''selection'' the coordinates of the corresponding residue entry in the residue library entry by the coordinates of the current structure. By default, the selection made in the most recent '''atoms select''' command is used, or all atoms if no selection has been made so far.
-the coordinates of the corresponding residue entry in the residue
+The coordinate replacement takes place only for residues for which the atom selection includes all atoms of a residue entry in the residue library, including possible “overlap” atoms with the preceding and following residue. For instance, the overlap atoms of an amino acid residue comprise the atoms C and O of the preceding residue, and N of the following residue. The coordinates of the first matching residue in the current structure are used. Replace selected coordinates in the library with those of the current structure.

Admin: 1 revision

2009-01-29T11:26:55Z

1 revision

New page

== Parameters ==

; selection=''string'': (default: ''none'')

== Description ==

This command replaces for the atoms matched by the selection ''string''
the coordinates of the corresponding residue entry in the residue
library entry by the coordinates of the current structure. By default,
the selection made in the most recent '''atoms select''' command is used,
or all atoms if no selection has been made so far.

The coordinate replacement takes place only for residues for which the
atom selection includes all atoms of a residue entry in the residue
library, including possible "overlap" atoms with the preceding and
following residue. For instance, in the case of amino acid residues
the atoms C and O of the preceding residue, and N of the following
residue). The coordinates of the first matching residue in the current
structure are used.