CYANA Command: molecules symdist - Revision history

Masayo: /* Parameters */

2009-08-13T12:01:33Z

Parameters

← Older revision		Revision as of 14:01, 13 August 2009
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	== Parameters ==		== Parameters ==

	; first=''~~string~~'': (required)		; first=''[[atom selection]]'': (required)
	; second=''~~string~~'': (required)		; second=''[[atom selection]]'': (required)
	; number=''integer'': (default: 100000)		; number=''integer'': (default: 100000)
	; append		; append

Masayo: /* Parameters */

2009-08-12T13:30:42Z

Parameters

← Older revision		Revision as of 15:30, 12 August 2009
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	== Parameters ==		== Parameters ==

	; first=''string'' (required)		; first=''string'': (required)
	; second=''string'' (required)		; second=''string'': (required)
	; number=''integer'': (default: 100000)		; number=''integer'': (default: 100000)
	; append		; append

Masayo: /* Description */

2009-08-12T10:37:59Z

Description

← Older revision		Revision as of 12:37, 12 August 2009
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	== Description ==		== Description ==

	Imposes distance difference restraints that favor a symmetric relative orientation of the monomers in a symmetric multimer. The command defines restraints on the difference between corresponding distances between atoms selected by the ''first'' and the ''second'' atom selection. in the monomers of a symmetric multimer. Typically, the ''first'' selection selects a subset of the atoms of the first monomer, and the ''second'' selection selects the corresponding atoms in the second monomer. For each pair of distances between corresponding atoms ''A''/''A''’ and ''B''/''B''’ that match the ''first'' and ''second'' selection, respectively, a term ''w''<sub>ide</sub>(''d''<sub>AB’</sub>-''d''<sub>A’B</sub>)<sup>2</sup> is added to the target function, where ''w''<sub>ide</sub> is the weighting factor defined by the variable '''weight_sym'''.		Imposes distance difference restraints that favor a symmetric relative orientation of the monomers in a symmetric multimer. The command defines restraints on the difference between corresponding distances between atoms selected by the ''first'' and the ''second'' atom selection. in the monomers of a symmetric multimer. Typically, the ''first'' selection selects a subset of the atoms of the first monomer, and the ''second'' selection selects the corresponding atoms in the second monomer. For each pair of distances between corresponding atoms ''A''/''A''’ and ''B''/''B''’ that match the ''first'' and ''second'' selection, respectively, a term ''w''<sub>ide</sub>(''d''<sub>AB’</sub>-''d''<sub>A’B</sub>)<sup>2</sup> is added to the target function, where ''w''<sub>ide</sub> is the weighting factor defined by the variable [[CYANA Variables: weight_sym\|'''weight_sym''']].

Masayo: /* Parameters */

2009-08-06T15:38:53Z

Parameters

← Older revision		Revision as of 17:38, 6 August 2009
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	; number=''integer'': (default: 100000)		; number=''integer'': (default: 100000)
	; append		; append

			== Description ==

			Imposes distance difference restraints that favor a symmetric relative orientation of the monomers in a symmetric multimer. The command defines restraints on the difference between corresponding distances between atoms selected by the ''first'' and the ''second'' atom selection. in the monomers of a symmetric multimer. Typically, the ''first'' selection selects a subset of the atoms of the first monomer, and the ''second'' selection selects the corresponding atoms in the second monomer. For each pair of distances between corresponding atoms ''A''/''A''’ and ''B''/''B''’ that match the ''first'' and ''second'' selection, respectively, a term ''w''<sub>ide</sub>(''d''<sub>AB’</sub>-''d''<sub>A’B</sub>)<sup>2</sup> is added to the target function, where ''w''<sub>ide</sub> is the weighting factor defined by the variable '''weight_sym'''.

Admin: 1 revision

2009-01-29T11:26:56Z

1 revision

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== Parameters ==

; first=''string'' (required)
; second=''string'' (required)
; number=''integer'': (default: 100000)
; append