CYANA Command: write aco - Revision history

Guentert: /* Parameters */

2009-02-03T22:12:42Z

Parameters

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	: Option to output the file in the format of the program XPLOR instead of the standard [[angle restraint file]] format of the program CYANA.		: Option to output the file in the format of the program XPLOR instead of the standard [[angle restraint file]] format of the program CYANA.
	; structures=''integer''		; structures=''integer''
	: (default: 10) The minimal number of structures in which the local target function of a residue and its immediate sequential neighbors must be below the value of the [CYANA Variable: ang_cut\|ang_cut] to generate a dihedral angle restraint for the REDAC strategy. This parameter can only be used in conjunction with the '''redac'' option.		: (default: 10) The minimal number of structures in which the local target function of a residue and its immediate sequential neighbors must be below the value of the [[CYANA Variable: ang_cut\|ang_cut]] to generate a dihedral angle restraint for the REDAC strategy. This parameter can only be used in conjunction with the '''redac'' option.
	; maxwidth=''real''		; maxwidth=''real''
	: (default: 270.0 degrees) The maximal width of the allowed range of a dihedral angle restraint for the REDAC strategy. This parameter can only be used in conjunction with the '''redac'' option.		: (default: 270.0 degrees) The maximal width of the allowed range of a dihedral angle restraint for the REDAC strategy. This parameter can only be used in conjunction with the '''redac'' option.

Guentert at 22:11, 3 February 2009

2009-02-03T22:11:52Z

← Older revision		Revision as of 00:11, 4 February 2009
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	: Option to output the file in the format of the program XPLOR instead of the standard [[angle restraint file]] format of the program CYANA.		: Option to output the file in the format of the program XPLOR instead of the standard [[angle restraint file]] format of the program CYANA.
	; structures=''integer''		; structures=''integer''
	: (default: 10)		: (default: 10) The minimal number of structures in which the local target function of a residue and its immediate sequential neighbors must be below the value of the [CYANA Variable: ang_cut\|ang_cut] to generate a dihedral angle restraint for the REDAC strategy. This parameter can only be used in conjunction with the '''redac'' option.
	; maxwidth=''real'': (default: 270.0)		; maxwidth=''real''
			: (default: 270.0 degrees) The maximal width of the allowed range of a dihedral angle restraint for the REDAC strategy. This parameter can only be used in conjunction with the '''redac'' option.
	; append		; append
	: Option to append the output to the given file. By default, an already existing output file is overwritten.		: Option to append the output to the given file. By default, an already existing output file is overwritten.

Guentert: /* Parameters */

2009-02-03T22:08:21Z

Parameters

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	:(required) The name of the output torsion angle restraint file. The default filename extension ".upl" is used unless a filename extension is given explicitly.		:(required) The name of the output torsion angle restraint file. The default filename extension ".upl" is used unless a filename extension is given explicitly.
	; redac		; redac
	: Option to derive redundant dihedral angle restraints for the REDAC strategy [http://dx.doi.org/10.1007/BF02192866 (Güntert & Wüthrich, 1991)]. See ~~[[#~~description]] below.		: Option to derive redundant dihedral angle restraints for the REDAC strategy [http://dx.doi.org/10.1007/BF02192866 (Güntert & Wüthrich, 1991)]. See description below.
	; xplor		; xplor
	: Option to output the file in the format of the program XPLOR instead of the standard [[angle restraint file]] format of the program CYANA.		: Option to output the file in the format of the program XPLOR instead of the standard [[angle restraint file]] format of the program CYANA.
	; structures=''integer''		; structures=''integer''
	: (default: 10)		: (default: 10)
	; maxwidth=''real'': (default: 270.0)		; maxwidth=''real'': (default: 270.0)
	; append		; append

Guentert: /* Parameters */

2009-02-03T22:07:49Z

Parameters

← Older revision		Revision as of 00:07, 4 February 2009
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	:(required) The name of the output torsion angle restraint file. The default filename extension ".upl" is used unless a filename extension is given explicitly.		:(required) The name of the output torsion angle restraint file. The default filename extension ".upl" is used unless a filename extension is given explicitly.
	; redac		; redac
	: Option to derive redundant dihedral angle restraints for the REDAC strategy [http://dx.doi.org/10.1007/BF02192866 (Güntert & Wüthrich, 1991)]. See [#description~~\|description~~] below.		: Option to derive redundant dihedral angle restraints for the REDAC strategy [http://dx.doi.org/10.1007/BF02192866 (Güntert & Wüthrich, 1991)]. See [[#description]] below.
	; xplor		; xplor
	: Option to output the file in the format of the program XPLOR instead of the standard [[angle restraint file]] format of the program CYANA.		: Option to output the file in the format of the program XPLOR instead of the standard [[angle restraint file]] format of the program CYANA.

Guentert: /* Parameters */

2009-02-03T22:07:06Z

Parameters

← Older revision		Revision as of 00:07, 4 February 2009
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	:(required) The name of the output torsion angle restraint file. The default filename extension ".upl" is used unless a filename extension is given explicitly.		:(required) The name of the output torsion angle restraint file. The default filename extension ".upl" is used unless a filename extension is given explicitly.
	; redac		; redac
	: Option to derive redundant dihedral angle restraints for the REDAC strategy [http://dx.doi.org/10.1007/BF02192866 (Güntert & Wüthrich, 1991)]. See [#~~Description~~\|description] below.		: Option to derive redundant dihedral angle restraints for the REDAC strategy [http://dx.doi.org/10.1007/BF02192866 (Güntert & Wüthrich, 1991)]. See [#description\|description] below.
	; xplor		; xplor
	: Option to output the file in the format of the program XPLOR instead of the standard [[angle restraint file]] format of the program CYANA.		: Option to output the file in the format of the program XPLOR instead of the standard [[angle restraint file]] format of the program CYANA.

Guentert: /* Parameters */

2009-02-03T22:06:50Z

Parameters

← Older revision		Revision as of 00:06, 4 February 2009
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	:(required) The name of the output torsion angle restraint file. The default filename extension ".upl" is used unless a filename extension is given explicitly.		:(required) The name of the output torsion angle restraint file. The default filename extension ".upl" is used unless a filename extension is given explicitly.
	; redac		; redac
	: Option to derive redundant dihedral angle restraints for the REDAC strategy [http://dx.doi.org/10.1007/BF02192866 (Güntert & Wüthrich, 1991)]. See [#Description] below.		: Option to derive redundant dihedral angle restraints for the REDAC strategy [http://dx.doi.org/10.1007/BF02192866 (Güntert & Wüthrich, 1991)]. See [#Description\|description] below.
	; xplor		; xplor
	: Option to output the file in the format of the program XPLOR instead of the standard [[angle restraint file]] format of the program CYANA.		: Option to output the file in the format of the program XPLOR instead of the standard [[angle restraint file]] format of the program CYANA.

Guentert: /* Parameters */

2009-02-03T22:06:40Z

Parameters

← Older revision		Revision as of 00:06, 4 February 2009
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	:(required) The name of the output torsion angle restraint file. The default filename extension ".upl" is used unless a filename extension is given explicitly.		:(required) The name of the output torsion angle restraint file. The default filename extension ".upl" is used unless a filename extension is given explicitly.
	; redac		; redac
	: Option to derive redundant dihedral angle restraints for the REDAC strategy [http://dx.doi.org/10.1007/BF02192866 (Güntert & Wüthrich, 1991)]. See [#~~description~~] below.		: Option to derive redundant dihedral angle restraints for the REDAC strategy [http://dx.doi.org/10.1007/BF02192866 (Güntert & Wüthrich, 1991)]. See [#Description] below.
	; xplor		; xplor
	: Option to output the file in the format of the program XPLOR instead of the standard [[angle restraint file]] format of the program CYANA.		: Option to output the file in the format of the program XPLOR instead of the standard [[angle restraint file]] format of the program CYANA.

Guentert: /* Parameters */

2009-02-03T22:06:20Z

Parameters

← Older revision		Revision as of 00:06, 4 February 2009
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	:(required) The name of the output torsion angle restraint file. The default filename extension ".upl" is used unless a filename extension is given explicitly.		:(required) The name of the output torsion angle restraint file. The default filename extension ".upl" is used unless a filename extension is given explicitly.
	; redac		; redac
	: Option to derive redundant dihedral angle restraints for the REDAC strategy [http://dx.doi.org/10.1007/BF02192866 (Güntert & Wüthrich, 1991)]. See description below.		: Option to derive redundant dihedral angle restraints for the REDAC strategy [http://dx.doi.org/10.1007/BF02192866 (Güntert & Wüthrich, 1991)]. See [#description] below.
	; xplor		; xplor
	: Option to output the file in the format of the program XPLOR instead of the standard [[angle restraint file]] format of the program CYANA.		: Option to output the file in the format of the program XPLOR instead of the standard [[angle restraint file]] format of the program CYANA.

Guentert at 22:05, 3 February 2009

2009-02-03T22:05:45Z

← Older revision		Revision as of 00:05, 4 February 2009
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	:(required) The name of the output torsion angle restraint file. The default filename extension ".upl" is used unless a filename extension is given explicitly.		:(required) The name of the output torsion angle restraint file. The default filename extension ".upl" is used unless a filename extension is given explicitly.
	; redac		; redac
	: Option to derive redundant dihedral angle restraints for the REDAC strategy [http://dx.doi.org/10.1007/BF02192866 (~~Guntert~~ & ~~Wuthrich~~, 1991)]. See description below.		: Option to derive redundant dihedral angle restraints for the REDAC strategy [http://dx.doi.org/10.1007/BF02192866 (Güntert & Wüthrich, 1991)]. See description below.
	; xplor		; xplor
	: Option to output the file in the format of the program XPLOR instead of the standard [[angle restraint file]] format of the program CYANA.		: Option to output the file in the format of the program XPLOR instead of the standard [[angle restraint file]] format of the program CYANA.

Guentert: /* Description */

2009-02-03T22:04:16Z

Description

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	redundant dihedral angle restraints for a given residue, its local		redundant dihedral angle restraints for a given residue, its local
	target function value (and that of its immediate neighbors must be		target function value (and that of its immediate neighbors must be
	below the cutoff value given by the variable [CYANA Variable: ang_cut] in at least N		below the cutoff value given by the variable [CYANA Variable: ang_cut\|ang_cut] in at least N
	structures. Redundant dihedral angle restraints with an allowed range		structures. Redundant dihedral angle restraints with an allowed range
	wider than Df degrees are discarded. The parameters structures and		wider than Df degrees are discarded. The parameters structures and