https://cyana.org/w/index.php?action=history&feed=atom&title=CYANA_Commands%3A_distances_calculateCYANA Commands: distances calculate - Revision history2026-04-30T12:50:31ZRevision history for this page on the wikiMediaWiki 1.45.1https://cyana.org/w/index.php?title=CYANA_Commands:_distances_calculate&diff=4508&oldid=prevAdmin: 1 revision2009-01-28T23:35:41Z<p>1 revision</p>
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== Parameters ==<br />
<br />
; first=''string'' (required)<br />
; second=''string'' (required)<br />
; levels=''integer range'': (default: -99999..99999)<br />
; distance=''real range'': (default: 0.0..99999.9)<br />
<br />
== Description ==<br />
<br />
This command lists interatomic distances between atoms selected by<br />
the '''first''' and '''second''' atom selection. Only those atom pairs with<br />
a residue number difference in the range defined by the '''levels'''<br />
parameter are considered. If structures have been read and selected,<br />
then only those atom pairs with a corresponding average distance in<br />
the range defined by the '''distance''' parameter are considered.<br />
<br />
The command reports the average distance, its standard deviation,<br />
minimal value and maximal value in the selected structures, as well<br />
as the number of structures in which the distance lies in the range<br />
defined by the '''distance''' parameter. For each selected structure,<br />
the distance value is represented schematically by a '''-''' sign if the<br />
distance is shorter than the lower bound of the '''distance''' range, by a<br />
'''*''' sign if it is within the bounds of the '''distance''' range, or by a<br />
'''+''' sign if it is longer than the upper bound of the '''distance''' range.</div>Admin