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	<title>CYANA Commands: distances stereoexpand - Revision history</title>
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	<updated>2026-04-09T17:44:45Z</updated>
	<subtitle>Revision history for this page on the wiki</subtitle>
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		<id>https://cyana.org/w/index.php?title=CYANA_Commands:_distances_stereoexpand&amp;diff=4544&amp;oldid=prev</id>
		<title>Admin: 1 revision</title>
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		<updated>2009-01-28T23:35:41Z</updated>

		<summary type="html">&lt;p&gt;1 revision&lt;/p&gt;
&lt;p&gt;&lt;b&gt;New page&lt;/b&gt;&lt;/p&gt;&lt;div&gt;&lt;br /&gt;
== Parameters ==&lt;br /&gt;
&lt;br /&gt;
; selection=&amp;#039;&amp;#039;string&amp;#039;&amp;#039;: (default: &amp;#039;&amp;#039;none&amp;#039;&amp;#039;)&lt;br /&gt;
; shrink                         &lt;br /&gt;
&lt;br /&gt;
== Description ==&lt;br /&gt;
&lt;br /&gt;
This command replaces in the distance restraints that match the&lt;br /&gt;
selection &amp;#039;&amp;#039;string&amp;#039;&amp;#039; the diastereotopic substitutents that are not&lt;br /&gt;
stereospecificly assigned by their corresponding pseudoatoms. By&lt;br /&gt;
default, the selection made in the most recent &amp;#039;&amp;#039;&amp;#039;distances select&amp;#039;&amp;#039;&amp;#039;&lt;br /&gt;
command is used, or all distance restraints if no selection has been&lt;br /&gt;
made so far.&lt;br /&gt;
&lt;br /&gt;
If the option &amp;#039;&amp;#039;&amp;#039;shrink&amp;#039;&amp;#039;&amp;#039; is set, a pseudoatom correction is added to&lt;br /&gt;
the upper distance bound. The corrected upper distance bound u is&lt;br /&gt;
calculated from the original upper bound u according to the formula&lt;br /&gt;
&lt;br /&gt;
  u&amp;#039;&amp;#039;&amp;#039; = (u^-6 + (u + c1)^-6 + (u + c2)^-6 + (u + c1 + c2)^-6)^(-1/6),&lt;br /&gt;
&lt;br /&gt;
where c1 denotes the distance between the first diatereotopic&lt;br /&gt;
substituent and its corresponding pseudoatom, and c2 denotes&lt;br /&gt;
the distance between the second diatereotopic substituent and its&lt;br /&gt;
corresponding pseudoatom. If the first or the second atom involved in&lt;br /&gt;
the restraint are not diastereotopic substitutents, or stereospecificly&lt;br /&gt;
assigned, then the corresponding terms that involve c1 and c2 are&lt;br /&gt;
omitted from the sum in the formula for u&amp;#039;&amp;#039;&amp;#039;.&lt;/div&gt;</summary>
		<author><name>Admin</name></author>
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