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	<title>CYANA scripts: cyana - Revision history</title>
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	<updated>2026-05-14T02:47:50Z</updated>
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	<entry>
		<id>https://cyana.org/w/index.php?title=CYANA_scripts:_cyana&amp;diff=4446&amp;oldid=prev</id>
		<title>Admin: 1 revision</title>
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		<updated>2009-01-28T23:35:40Z</updated>

		<summary type="html">&lt;p&gt;1 revision&lt;/p&gt;
&lt;p&gt;&lt;b&gt;New page&lt;/b&gt;&lt;/p&gt;&lt;div&gt;&lt;br /&gt;
Synopsis: cyana [option] [macro]&lt;br /&gt;
&lt;br /&gt;
The &amp;#039;&amp;#039;&amp;#039;cyana&amp;#039;&amp;#039;&amp;#039; shell script starts the CYANA program. If present, the given&lt;br /&gt;
&amp;#039;&amp;#039;macro&amp;#039;&amp;#039; is executed by CYANA, otherwise the program will prompt for&lt;br /&gt;
interactive input. The &amp;#039;&amp;#039;macro&amp;#039;&amp;#039; name can be given with or without the&lt;br /&gt;
&amp;#039;&amp;#039;&amp;#039;.cya&amp;#039;&amp;#039;&amp;#039; extension.&lt;br /&gt;
&lt;br /&gt;
The &amp;#039;&amp;#039;&amp;#039;cyana&amp;#039;&amp;#039;&amp;#039; command can only be invoked from the Unix shell. The command&lt;br /&gt;
syntax follows Unix (not INCLAN) conventions.&lt;br /&gt;
&lt;br /&gt;
Options:&lt;br /&gt;
&lt;br /&gt;
  -h  help&lt;br /&gt;
  -c &amp;#039;&amp;#039;command&amp;#039;&amp;#039;  command to start program&lt;br /&gt;
  -S  run in safe mode, i.e. within one directory&lt;br /&gt;
  -t &amp;#039;&amp;#039;system&amp;#039;&amp;#039; use executable for explicit system type&lt;br /&gt;
  -x  display name of executable without executing it&lt;br /&gt;
&lt;br /&gt;
Executables for several different system types can be installed&lt;br /&gt;
simultaneously. The &amp;#039;&amp;#039;&amp;#039;cyana&amp;#039;&amp;#039;&amp;#039; script chooses automatically an executable&lt;br /&gt;
that is suitable for the present computer and operating system.&lt;br /&gt;
Alternatively, the system can be chosen explicitly with the &amp;#039;&amp;#039;&amp;#039;-t&amp;#039;&amp;#039;&amp;#039; option.&lt;br /&gt;
&lt;br /&gt;
The &amp;#039;&amp;#039;&amp;#039;-c&amp;#039;&amp;#039;&amp;#039; option can be used, for example, to start a parallel MPI&lt;br /&gt;
version of the program with &amp;#039;&amp;#039;&amp;#039;mpirun&amp;#039;&amp;#039;&amp;#039;, or to run CYANA under the control&lt;br /&gt;
of a debugger. For example,&lt;br /&gt;
&lt;br /&gt;
  cyana -t intel-debug -c gdb&lt;br /&gt;
  &lt;br /&gt;
starts a CYANA version for the system type &amp;#039;&amp;#039;&amp;#039;intel-debug&amp;#039;&amp;#039;&amp;#039; (compiled with&lt;br /&gt;
the Intel Fortran compiler using switches to include debugging&lt;br /&gt;
information) under the control of the GNU debugger, &amp;#039;&amp;#039;&amp;#039;gdb&amp;#039;&amp;#039;&amp;#039;.&lt;br /&gt;
&lt;br /&gt;
The &amp;#039;&amp;#039;&amp;#039;cyanajob&amp;#039;&amp;#039;&amp;#039; script provides a convenient way to run CYANA calculations &lt;br /&gt;
in parallel and/or in batch mode. &lt;br /&gt;
&lt;br /&gt;
== See also ==&lt;br /&gt;
&lt;br /&gt;
* [[cyanajob]]&lt;/div&gt;</summary>
		<author><name>Admin</name></author>
	</entry>
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