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Synopsis: cyanatable [option] [prefix] [logfile]<br />
<br />
The '''cyanatable''' shell script produces a summary table of a combined<br />
automated NOESY assignment and structure calculation run executed with<br />
the '''noeassign''' macro. Statistics on the NOESY peak assignments, the<br />
upper distance bounds, and the structure calculation are extracted from<br />
output files produced by '''noeassign''' and arranged in a table with one<br />
column for each cycle of combined automated NOESY assignment and<br />
structure calculation. The standard output from the '''noeassign''' run must<br />
have been collected in a log file called AUTO.out, CANDID.out, CALC.out,<br />
''prefix''.out, or ''logfile''. <br />
<br />
If present, the given ''prefix'' is prepended to all other input file<br />
names. If, for instance, ''prefix'' is '''run1''', then the '''cyanatable'''<br />
script will look for files named '''run1cycle1.noa''', '''run1cycle1.ovw''' etc.<br />
instead of the files with default file names '''cycle1.noa''', '''cycle1.ovw'''<br />
etc.<br />
<br />
This command can be invoked from the Unix shell or from within CYANA.<br />
The command syntax follows Unix (not INCLAN) conventions.<br />
<br />
Options:<br />
<br />
-h help<br />
-l long, more detailed output<br />
-p report percentages instead of absolute values<br />
<br />
== See also ==<br />
<br />
* [[noeassign]]</div>Admin