Cyanafilter - Revision history

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			= cyanafilter =

	Synopsis: cyanafilter [option] file...		Synopsis: cyanafilter [option] file...

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New page

Synopsis: cyanafilter [option] file...

The '''cyanafilter''' shell script filters a NOESY assignment report
according to a variety of criteria. Assignment information is printed
for the peaks that match the given criteria. NOESY assignment reports
are produced by the '''assign''' command that is used, for instance, in the
combined NOESY assignment and structure calculation strategy implemented
in the '''noeassign''' macro that yields NOESY assignment report files
called '''cycle1.noa''', '''cycle2.noa''', etc. for each cycle of the
calculation.

The '''cyanafilter''' command can be invoked from the Unix shell or from
within CYANA. The command syntax follows Unix (not INCLAN) conventions.

Options:

-a list additionally assigned cross peaks
-A list assigned cross peaks
-b ''atom'' list peaks with assignment possibility to given atom
-c list compatible peaks
-e list peaks with not enough quality
-h help
-i list incompatible peaks
-k ''atom'' list peaks assigned to given atom
-l ''atom'' list peaks assigned manually to given atom
-L ''level'' list peaks with |i-j| ''= level
-m list manually assigned peaks
-M list manually not assigned peaks
-n list only number of peaks
-p ''peaknr'' list peak with given number
-P ''file'' list peak present in the given file
-q ''quality'' list peaks with NOE support '' quality
-Q ''quality'' list peaks with NOE support '' quality
-r ''rank'' list peaks with manual rank ''= rank
-R list peaks with manual assignment not found
-s short; do not list network-anchoring details
-S ''spectrum'' list peaks from the given spectrum
-u list unassigned peaks
-v list violated peaks
-V ''viol'' list peaks with violation greater than ''viol''
file input CYANA assignment file (.noa)

== See also ==

* [[assign]]
* [[noeassign]]

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	Options:		Options:

	-a list additionally assigned cross peaks		-a list additionally assigned cross peaks
	-A list assigned cross peaks		-A list assigned cross peaks
	-b ''atom'' list peaks with assignment possibility to given atom		-b ''atom'' list peaks with assignment possibility to given atom
	-c list compatible peaks		-c list compatible peaks
	-e list peaks with not enough quality		-e list peaks with not enough quality
	-h help		-h help
	-i list incompatible peaks		-i list incompatible peaks
	-k ''atom'' list peaks assigned to given atom		-k ''atom'' list peaks assigned to given atom
	-l ''atom'' list peaks assigned manually to given atom		-l ''atom'' list peaks assigned manually to given atom
	-L ''level'' list peaks with \|i-j\| ''= level		-L ''level'' list peaks with \|i-j\| ''= level
	-m list manually assigned peaks		-m list manually assigned peaks
	-M list manually not assigned peaks		-M list manually not assigned peaks
	-n list only number of peaks		-n list only number of peaks
	-p ''peaknr'' list peak with given number		-p ''peaknr'' list peak with given number
	-P ''file'' list peak present in the given file		-P ''file'' list peak present in the given file
	-q ''quality'' list peaks with NOE support '' quality		-q ''quality'' list peaks with NOE support '' quality
	-Q ''quality'' list peaks with NOE support '' quality		-Q ''quality'' list peaks with NOE support '' quality
	-r ''rank'' list peaks with manual rank ''= rank		-r ''rank'' list peaks with manual rank ''= rank
	-R list peaks with manual assignment not found		-R list peaks with manual assignment not found
	-s short; do not list network-anchoring details		-s short; do not list network-anchoring details
	-S ''spectrum'' list peaks from the given spectrum		-S ''spectrum'' list peaks from the given spectrum
	-u list unassigned peaks		-u list unassigned peaks
	-v list violated peaks		-v list violated peaks
	-V ''viol'' list peaks with violation greater than ''viol''		-V ''viol'' list peaks with violation greater than ''viol''
	file input CYANA assignment file (.noa)		file input CYANA assignment file (.noa)

	== See also ==		== See also ==