Praktikum Biophysikalische Chemie: Difference between revisions
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cd pep | cd pep | ||
* Use a text editor to write a new file, vaso.seq, that contains the peptide sequence, one residue name per line, given in the standard three-letter code for amino acids. | * Use a text editor to write a new file, vaso.seq, that contains the peptide sequence, one upper-case residue name per line, given in the standard three-letter code for amino acids, e.g. | ||
CYS | |||
TYR | |||
PHE | |||
GLN | |||
ASN | |||
CYS | |||
PRO | |||
ARG | |||
GLY | |||
* Use a text editor to write a new file, vaso.upl, that contains the upper distance bounds derived from NOESY cross peaks: | |||
Revision as of 16:18, 9 January 2009
- Download the course material: Store the file PBCPraktikumCyana.tgz in your home directory.
- Unpack the data:
tar zxf PBCPraktikumCyana.tgz
- Run the setup command:
setup_cyana
- Make a new directory for the structure calculation, and change into it:
mkdir pep cd pep
- Use a text editor to write a new file, vaso.seq, that contains the peptide sequence, one upper-case residue name per line, given in the standard three-letter code for amino acids, e.g.
CYS TYR PHE GLN ASN CYS PRO ARG GLY
- Use a text editor to write a new file, vaso.upl, that contains the upper distance bounds derived from NOESY cross peaks: