CYANA Command: write upl: Difference between revisions

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Instead of the command  
Instead of the command  


  write seq ''filename''.upl
  write upl ''filename''.upl


the shorthand version  
the shorthand version  

Revision as of 22:46, 3 February 2009

Write upper distance limit file

Parameters

file=filename.upl
(required) The name of the output upper distance limit file. The default filename extension ".upl" is used unless a filename extension is given explicitly.
sorted
Option to sort the distance restraints by the first and second atom. By default, the upper distance limits are written in the order in which they are stored in the program, e.g. the order in which they have been read from an input file.
swapped
Option to output restraints that involve diastereotopic hydrogens or methyl groups after optimal swapping of the stereopartners for minimal target function value.
xplor
Option to output the file in the format of the program XPLOR instead of the standard distance restraint file format of the program CYANA.
nocomments
Option to suppress the output of comments such as the number of the peak from which the restraint originated.
append
Option to append the output to the given file. By default, an already existing output file is overwritten.

Description

Writes a file with the currently selected upper distance limits in the standard distance restraint file format of the program CYANA, or optionally in XPLOR format.

Instead of the command

write upl filename.upl

the shorthand version

write filename.upl

can be used if the default filename extension is ".upl".