Distance restraint file: Difference between revisions
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in the target function equals the relative weight times the weight ing factor for the corresponding type of constraints. | in the target function equals the relative weight times the weight ing factor for the corresponding type of constraints. | ||
Upper distance limit | # Upper distance limit | ||
91 THR HB 93 GLN H 5.50 | 91 THR HB 93 GLN H 5.50 | ||
81 ILE HB 82 PRO HA 5.19 | 81 ILE HB 82 PRO HA 5.19 | ||
Line 38: | Line 38: | ||
43 SER QB 48 GLU HB3 4.43 | 43 SER QB 48 GLU HB3 4.43 | ||
43 SER QB 46 LYS QD 4.91 | 43 SER QB 46 LYS QD 4.91 | ||
... | |||
95 LEU H 101 VAL QQG 4.75 | 95 LEU H 101 VAL QQG 4.75 | ||
95 LEU HG 101 VAL QQG 5.23 | 95 LEU HG 101 VAL QQG 5.23 | ||
Line 2,313: | Line 71: | ||
110 GLY QA 111 PRO QD 2.70 | 110 GLY QA 111 PRO QD 2.70 | ||
Lower distance limit | # Lower distance limit | ||
81 ILE O 85 ILE H 1.80 | 81 ILE O 85 ILE H 1.80 | ||
81 ILE O 85 ILE N 2.70 | 81 ILE O 85 ILE N 2.70 |
Latest revision as of 09:29, 22 July 2009
The upper and lower distance limit files are used to enter distance constraints into the program CYANA. For each distance constraint there is a line with the following data: residue number, residue name and atom name of the first and second atom, respectively, the distance limit in Å, and, optionally, the relative weight of the constraint. The default relative weight is 1. Relative weights should be positive. The weight of a constraint in the target function equals the relative weight times the weight ing factor for the corresponding type of constraints.
# Upper distance limit 91 THR HB 93 GLN H 5.50 81 ILE HB 82 PRO HA 5.19 80 SER HB3 82 PRO HD2 3.86 27 GLU HB2 28 VAL HA 5.50 28 VAL HA 32 LEU QD1 5.50 81 ILE HA 84 LEU HB3 3.74 81 ILE HA 81 ILE QG2 3.46 81 ILE HA 81 ILE HG12 3.77 81 ILE HA 81 ILE HG13 3.77 28 VAL HA 31 LEU HB2 4.12 28 VAL HA 39 LEU QD1 4.59 28 VAL HA 31 LEU QD1 3.38 28 VAL HA 39 LEU QD2 4.93 28 VAL HA 31 LEU HB3 5.30 28 VAL HA 28 VAL QG1 3.53 32 LEU QD2 52 SER HB3 4.57 8 GLU QG 9 VAL HA 5.50 9 VAL HA 10 GLN QG 5.50 33 VAL HA 33 VAL QG1 3.39 33 VAL HA 33 VAL QG2 3.39 43 SER QB 46 LYS HG2 5.50 43 SER QB 46 LYS HG3 5.50 9 VAL HA 9 VAL QG1 3.99 99 SER QB 101 VAL H 5.50 62 PHE QE 99 SER QB 4.71 42 GLU HA 43 SER QB 5.50 42 GLU HG3 43 SER QB 5.26 43 SER QB 48 GLU HB2 4.43 43 SER QB 48 GLU HB3 4.43 43 SER QB 46 LYS QD 4.91 ... 95 LEU H 101 VAL QQG 4.75 95 LEU HG 101 VAL QQG 5.23 97 LYS HA 97 LYS QD 3.44 99 SER HA 101 VAL QQG 4.62 99 SER QB 101 VAL QQG 3.60 99 SER HG 101 VAL QQG 4.20 100 GLY H 101 VAL QQG 4.87 101 VAL H 101 VAL QQG 2.96 101 VAL HA 101 VAL QQG 3.06 101 VAL QQG 102 VAL HA 5.44 101 VAL QQG 102 VAL HB 5.44 101 VAL QQG 103 LEU H 5.44 101 VAL QQG 103 LEU QD1 5.44 102 VAL HB 104 HIS QB 5.34 105 ARG H 105 ARG QG 4.99 105 ARG QG 106 ALA H 3.62 105 ARG QD 106 ALA H 5.34 106 ALA H 107 VAL QQG 5.44 106 ALA HA 107 VAL QQG 4.05 107 VAL H 107 VAL QQG 3.03 107 VAL HA 107 VAL QQG 2.99 107 VAL HA 108 PRO QG 5.11 107 VAL QQG 108 PRO QG 5.28 107 VAL QQG 108 PRO QD 3.51 107 VAL QQG 109 SER QB 5.28 108 PRO QB 109 SER H 3.46 108 PRO QB 110 GLY H 3.89 109 SER H 109 SER QB 3.02 109 SER QB 110 GLY H 3.53 110 GLY QA 111 PRO QG 4.18 110 GLY QA 111 PRO QD 2.70
# Lower distance limit 81 ILE O 85 ILE H 1.80 81 ILE O 85 ILE N 2.70 82 PRO O 86 ASP H 1.80 82 PRO O 86 ASP N 2.70 83 LEU O 87 HIS H 1.80 83 LEU O 87 HIS N 2.70 84 LEU O 88 LEU H 1.80 84 LEU O 88 LEU N 2.70 85 ILE O 89 LEU H 1.80 85 ILE O 89 LEU N 2.70 86 ASP O 90 SER H 1.80 86 ASP O 90 SER N 2.70 87 HIS O 91 THR H 1.80 87 HIS O 91 THR N 2.70