CYANA Command: distances make: Difference between revisions

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== Description ==
== Description ==


This command generates a new distance restraint (an upper limit
Makes new distance restraints between the atoms selected by the ''first'' and ''second'' atom selections, respectively, and adds them to the list of existing distance restraints. Alternatively, a single distance restraint with these assignment possibilities can be generated if the option '''ambiguous''' is given. Distance restraints will be added only for atom pairs for which the average distance in the selected structures is within the given ''distance'' range, if structures are present. An upper distance bound ''upl'' is made if the parameter '''upl''' is present. A lower distance bound ''lol'' is generated if the parameter '''lol''' is present. The relative ''weight'', and the violation ''confinement'' limit can be set.
unless the option lol is set) of d A between all atoms matching the
first atom selection and those matching the second atom selection. A
weight might be specified.
 
This command adds new distance restraints. Distance restraints
are added between atoms selected by the '''first''' and '''second''' atom
selections, respectively. If, in addition, structures are present,
then distance restraints will be added only for atom pairs for which
the average distance in the selected structures is within the range
given by the '''distance''' parameter.
 
The upper distance bound, the lower distance bound, the relative
weight, and the violation confinement limit are set as defined by the
'''upl''', '''lol''', '''weight''', and '''confine''' parameters.

Revision as of 14:11, 7 August 2009

Parameters

first=string (required)
second=string (required)
levels=integer range
(default: -99999..99999)
distance=real range
(default: 0.0..99999.9)
upl=real
(default: 1.0)
lol=real
(default: 1.0)
weight=real
(default: 1.0)
confine=real
(default: 1.0E20)
ambiguous

Description

Makes new distance restraints between the atoms selected by the first and second atom selections, respectively, and adds them to the list of existing distance restraints. Alternatively, a single distance restraint with these assignment possibilities can be generated if the option ambiguous is given. Distance restraints will be added only for atom pairs for which the average distance in the selected structures is within the given distance range, if structures are present. An upper distance bound upl is made if the parameter upl is present. A lower distance bound lol is generated if the parameter lol is present. The relative weight, and the violation confinement limit can be set.

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