CYANA Command: angles set: Difference between revisions
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== Parameters == | == Parameters == | ||
; selection= | ; selection=''string'' :(default: <blank>) | ||
; value= | ; value=''string'' :(default: <blank>) | ||
; free | ; free | ||
; fixed | ; fixed | ||
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== Description == | == Description == | ||
Command to set properties of the torsion angles that match the | Command to set properties of the torsion angles that match the selection ''string''. By default, the selection made in the most recent | ||
selection | [[CYANA Commands: angles select|'''angles select''']]' command is used, or all angles if no selection has been made so far. | ||
'angles select' command is used, or all angles if no selection has | |||
been made so far. | |||
The value of a torsion angle can be set with the parameter 'value'. The | The value of a torsion angle can be set with the parameter '''value'''. The ''string'' is a real number or a real expression that may contain the | ||
symbol '''value''' to represent the current value of the torsion angle. | |||
symbol 'value' to represent the current value of the torsion angle. | |||
Torsion angle values are given in degrees. | Torsion angle values are given in degrees. | ||
Torsion angles are fixed to their current value if the option 'fixed' | Torsion angles are fixed to their current value if the option '''fixed''' is given. Fixed torsion angles are non-rotatable and cannot be changed | ||
is given. Fixed torsion angles are non-rotatable and cannot be changed | |||
during minimization or torsion angle dynamics. | during minimization or torsion angle dynamics. | ||
Torsion angles are made rotatable if the option 'free' is given. Free | Torsion angles are made rotatable if the option '''free''' is given. Free torsion angles can be changed during minimization or torsion angle | ||
torsion angles can be changed during minimization or torsion angle | |||
dynamics. | dynamics. | ||
Initially, all torsion angles defined in the library are rotatable | Initially, all torsion angles defined in the library are rotatable except for those called OMEGA, which are typically used for the | ||
except for those called OMEGA, which are typically used for the | peptide bonds in polypeptides. OMEGA angles are fixed to 180 degrees ('''trans'''). Optionally, the OMEGA angle preceding a given amino acid | ||
peptide bonds in polypeptides. OMEGA angles are fixed to 180 degrees | residue can be fixed to 0 degrees ('''cis''') by a preceding the residue name in the sequence (.seq) file by a lowercase 'c'. | ||
(trans). Optionally, the OMEGA angle preceding a given amino acid | |||
residue can be fixed to 0 degrees (cis) by a preceding the residue | |||
name in the sequence (.seq) file by a lowercase 'c'. | |||
Latest revision as of 12:18, 12 January 2010
Parameters
- selection=string
- (default: <blank>)
- value=string
- (default: <blank>)
- free
- fixed
- rigid
- cis
- trans
Description
Command to set properties of the torsion angles that match the selection string. By default, the selection made in the most recent angles select' command is used, or all angles if no selection has been made so far.
The value of a torsion angle can be set with the parameter value. The string is a real number or a real expression that may contain the symbol value to represent the current value of the torsion angle. Torsion angle values are given in degrees.
Torsion angles are fixed to their current value if the option fixed is given. Fixed torsion angles are non-rotatable and cannot be changed during minimization or torsion angle dynamics.
Torsion angles are made rotatable if the option free is given. Free torsion angles can be changed during minimization or torsion angle dynamics.
Initially, all torsion angles defined in the library are rotatable except for those called OMEGA, which are typically used for the peptide bonds in polypeptides. OMEGA angles are fixed to 180 degrees (trans). Optionally, the OMEGA angle preceding a given amino acid residue can be fixed to 0 degrees (cis) by a preceding the residue name in the sequence (.seq) file by a lowercase 'c'.