CYANA Command: enoe init: Difference between revisions
No edit summary |
No edit summary |
||
| Line 12: | Line 12: | ||
The diagonal peak to use for normalization is specified by the parameter "normalize", using the integers 1 or 2 with the integers referring to the proton dimension in the peak list. | The diagonal peak to use for normalization is specified by the parameter "normalize", using the integers 1 or 2 with the integers referring to the proton dimension in the peak list. | ||
The parameter "normed" | The parameter "normed" specifies, if one wants to keep non-normalizable peaks (0) or only peaks that are properly normalized (1). | ||
The parameter "rhoavg" | |||
, dihedral angles and atoms are defined by the parameters '''residue''', '''angle''' and '''atom''', respectively. A new residue name is applied to all residue entries for which at least one atom has been selected. | , dihedral angles and atoms are defined by the parameters '''residue''', '''angle''' and '''atom''', respectively. A new residue name is applied to all residue entries for which at least one atom has been selected. | ||
The parameters '''residue''', '''angle''' and '''atom''' can take the special value “'''*'''” to reset the corresponding name to the original name that was read from the library file. | The parameters '''residue''', '''angle''' and '''atom''' can take the special value “'''*'''” to reset the corresponding name to the original name that was read from the library file. | ||
Revision as of 11:25, 17 January 2019
Parameters
- normalize=integer
- (default: none)
- normed =integer
- (default: none)
- rhoavg =real
- (default: none)
- time =string
- (default: none)
Description
Following the reading of peak lists, this command initializes the eNORA routine, fits the diagonal decays to obtain the auto-relaxation values and I(0), normalizes the cross peak intensities and fits the experimental buildups.
The diagonal peak to use for normalization is specified by the parameter "normalize", using the integers 1 or 2 with the integers referring to the proton dimension in the peak list. The parameter "normed" specifies, if one wants to keep non-normalizable peaks (0) or only peaks that are properly normalized (1). The parameter "rhoavg"
, dihedral angles and atoms are defined by the parameters residue, angle and atom, respectively. A new residue name is applied to all residue entries for which at least one atom has been selected. The parameters residue, angle and atom can take the special value “*” to reset the corresponding name to the original name that was read from the library file.