CYANA Command: enoe spindiff

Parameters

mode =integer

(default: 1)

b0field =real

(default: none)

tauc =real

(default: none)

maxdist =real

(default: 6.5A)

rmode =integer

(default: 1)

Description

This command performs the spin diffusion calculations within the eNORA routine.

There are two different approaches to determine spin-diffusion contributions to cross-peak buildups, both of which require PDB coordinates of a previously determined structure (a conventional NMR structure or an X-ray structure). Usually the lowest energy model of structure bundles is used for spin-diffusion calculation; however, averaging of spin-diffusion over individual conformers is possible, depending on how many structures were read, see

The parameter mode is used to select the spin diffusion correction method (FRM:1, TSS: 2). For the full-matrix (FRM, mode=1) approach to spin-diffusion approximation we use the multi-spin Solomon equation to express the mixing time-dependence of the NOESY intensities. In the FRM approach, the buildup intensities containing spin-diffusion are calculated for all spins within the spheres centered at spins i and j (Orts et al. 2012).

In the TSS (TSS, mode=2) approach, we follow a strategy in which spin-diffusion contributions are obtained from the summed contributions of the exact solutions of three-spin systems ijk (Vögeli et al. 2010) for all neighboring spins k within the cross section of the spheres centered at spin i and j. Importantly, scaling the contribution to spin-diffusion from spin k by its protonation level allows the setting of individual, spin specific deuteration levels in sample specific manner corresponding i.e. to methyl-group specific labeling schemes, see

The parameter b0field is the field strength [MHz]. The parameter tauc is the correlation time [s]. The parameter maxdist is the size of the spheres centered at spin i and j.

The parameter rmode is used to specify if experimental or simulated auto-relaxation (rho) values are used.