CYANA Command: enoe restraint: Difference between revisions

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== Description ==
== Description ==


This command converts the experimental distances to restraints for structure calculation.
This command converts the experimental distances to restraints for structure calculation by applying tolerances where required and performing pseudo atom expansion in line with '''expand=1''', see


The parameter '''b0field''' is the field strength [MHz].  
The parameter '''b0field''' is the field strength [MHz].  

Revision as of 12:34, 21 January 2019

Parameters

b0field =real
(required)
tauc =real
(required)
errStereoFlag =integer
(default: 1)
errStereo =real
(default: -1)
errUni =real
(default: 20)
errMeth =real
(default: 8.5)
errMethyleneQ =real
(default: 5)
errAro =real
(default: 11)
chiN =real
(default: -1)
chiNc =real
(default: -1)

Description

This command converts the experimental distances to restraints for structure calculation by applying tolerances where required and performing pseudo atom expansion in line with expand=1, see

The parameter b0field is the field strength [MHz]. The parameter tauc is the overall correlation time [ns]. The parameter errStereoFlag is set to change the default treatment of non-stereo specifically assigned restraints. errStereoFlag=1 is the default, errStereoFlag=0 turns this feature off. The parameter errStereo is set to override the automatically calculated values based on the difference in spin diffusion (errStereo=-1 , default) for non-stereo specifically assigned restraints, it may be set a user specific percentage. The parameter errUni is set to change the default tolerance for uni-directional eNOEs, default is errUni=20. The parameter errMeth is set to change the default tolerance for methyl eNOEs, default is errMeth=8.5. The parameter errMethyleneQ is set to change the default tolerance for methylene pseudo eNOEs, default is errMethyleneQ=5. The parameter errAro is set to change the default tolerance for aromatic eNOEs normalized to a non-aromatic spin, default is errAro=11. The parameter chiN is set to select a fresh hold for goodness of fit for output of restraints (experimental fit not corrected for spin diffusion). The parameter chiNc is set to select a fresh hold for goodness of fit for output of restraints (experimental fit corrected for spin diffusion).