Distances make: Difference between revisions
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= distances make = | |||
== Parameters == | == Parameters == | ||
Revision as of 19:12, 28 January 2009
distances make
Parameters
- first=string (required)
- second=string (required)
- levels=integer range
- (default: -99999..99999)
- distance=real range
- (default: 0.0..99999.9)
- upl=real
- (default: 1.0)
- lol=real
- (default: 1.0)
- weight=real
- (default: 1.0)
- confine=real
- (default: 1.0E20)
- ambiguous
Description
This command generates a new distance restraint (an upper limit unless the option lol is set) of d A between all atoms matching the first atom selection and those matching the second atom selection. A weight might be specified.
This command adds new distance restraints. Distance restraints are added between atoms selected by the first and second atom selections, respectively. If, in addition, structures are present, then distance restraints will be added only for atom pairs for which the average distance in the selected structures is within the range given by the distance parameter.
The upper distance bound, the lower distance bound, the relative weight, and the violation confinement limit are set as defined by the upl, lol, weight, and confine parameters.