CYANA Command: write upl: Difference between revisions

From CYANA Wiki
Jump to navigation Jump to search
m (1 revision)
 
No edit summary
Line 1: Line 1:
== Parameters ==
== Parameters ==


Line 13: Line 12:
Writes an upper limit distance restraint file. Optionally, the output
Writes an upper limit distance restraint file. Optionally, the output
may be appended to an existing file.
may be appended to an existing file.
''Write sequence file''
== Parameters ==
; file=''filename''.seq           
:(required) The name of the output sequence file. The filename extension ".seq" is used unless a filename extension is given explicitly.
; pure
: Option to write purely the residue names and residue numbers, excluding possible ''cis''-peptide bond declarations or '''link''' statements.
; append
: Option to append the output to the given file. By default, an already existing output file is overwritten.
== Description ==
Writes a file with the currently selected upper distance limits in the standard [[upper distance limit file]] format of the program CYANA.
Instead of the command
write seq ''filename''.upl
the shorthand version
write ''filename''.upl
can be used if the default filename extension is ".upl".

Revision as of 22:35, 3 February 2009

Parameters

file=filename.upl (required)
sorted
swapped
xplor
nocomments
append

Description

Writes an upper limit distance restraint file. Optionally, the output may be appended to an existing file.

Write sequence file

Parameters

file=filename.seq
(required) The name of the output sequence file. The filename extension ".seq" is used unless a filename extension is given explicitly.
pure
Option to write purely the residue names and residue numbers, excluding possible cis-peptide bond declarations or link statements.
append
Option to append the output to the given file. By default, an already existing output file is overwritten.

Description

Writes a file with the currently selected upper distance limits in the standard upper distance limit file format of the program CYANA.

Instead of the command

write seq filename.upl

the shorthand version

write filename.upl

can be used if the default filename extension is ".upl".