CYANA Command: grid aco: Difference between revisions

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== Description ==
== Description ==


This command generates dihedral angle restraints that include the
Generates torsion angle restraints that include the allowed angle values stored in the standard grid memory, '''A'''. If the '''add''' option is set, the new restraints will be added to those already present.  Alternatively, if the '''replace''' option is set, the “old” restraints will be discarded and replaced by those generated on the basis of the grid memory. If neither the '''add''' nor the '''replace''' option is set, the intersection between the “old” and “new” angle restraints will be formed.
allowed angle values stored in the standard grid memory, A. If
By setting the '''multiple''' option it is possible to generate several restraints for one torsion angle if several allowed regions for this torsion angle are present in the standard grid memory. By default, a single restraint that includes all allowed ranges is generated for each torsion angle.
the '''add''' option is set, the new restraints will be added to those
already present.  Alternatively, if the '''replace''' option is set, the
"old" restraints will be discarded and replaced by those generated on
the basis of the grid memory. If neither the '''add''' nor the '''replace'''
option is set, the intersection between the "old" and "new" angle
restraints will be formed.
 
By setting the '''multiple''' option it is possible to generate several
restraints for one dihedral angle if several allowed regions for this
dihedral angle are present in the standard grid memory. By default,
a single restraint that includes all allowed ranges is generated for
each dihedral angle.


== See also ==
== See also ==


* [[grid memory]]
* [[grid memory]]

Latest revision as of 12:30, 7 August 2009

Parameters

add|replace
multiple

Description

Generates torsion angle restraints that include the allowed angle values stored in the standard grid memory, A. If the add option is set, the new restraints will be added to those already present. Alternatively, if the replace option is set, the “old” restraints will be discarded and replaced by those generated on the basis of the grid memory. If neither the add nor the replace option is set, the intersection between the “old” and “new” angle restraints will be formed. By setting the multiple option it is possible to generate several restraints for one torsion angle if several allowed regions for this torsion angle are present in the standard grid memory. By default, a single restraint that includes all allowed ranges is generated for each torsion angle.

See also