Auto-relaxation and I(0) values: Difference between revisions
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# Specifying rho only | # Specifying rho only | ||
# Assignment, auto-relaxation, I(0)),class | # Assignment, auto-relaxation, I(0)),class | ||
5 SER HA | 5 SER HA 4.5175 -1.0000 4 | ||
6 LYS HD2 | 6 LYS HD2 6.8765 -1.0000 5 | ||
6 LYS QE | 6 LYS QE 3.8765 -1.0000 6 | ||
7 LEU | 7 LEU H 5.0283 -1.0000 2 | ||
7 LEU HA | 7 LEU HA 4.5175 -1.0000 4 | ||
7 LEU HB2 | 7 LEU HB2 6.8765 -1.0000 5 | ||
# Specifying I(0) only | # Specifying I(0) only |
Revision as of 16:15, 23 May 2019
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The rho files are used to enter auto-relaxation (rho) and back-predicted diagonal intensities, I(0) values, into the program CYANA. For each spin there is a line with the following data: residue number, residue name and atom name, rho (in seconds [s]) and the I(0) value; the flag -1.0000 is used for keeping the fitted value.
When there are only experimentally fitted values listed:
# Specifying both auto-relaxation (rho) and I(0) # Assignment, auto-relaxation, I(0),class 5 SER HA 3.7067 752840293.0085 1 6 LYS HD2 3.5576 1260683444.4590 1 6 LYS QE 2.6034 2487355750.6458 1 7 LEU H 5.0151 438936421.8380 1 7 LEU HA 6.2201 224628629.6022 1 7 LEU HB2 8.2344 164972110.8104 1
When there are rho values calculated from mean experimental values per spin-type:
# Specifying rho only # Assignment, auto-relaxation, I(0)),class 5 SER HA 4.5175 -1.0000 4 6 LYS HD2 6.8765 -1.0000 5 6 LYS QE 3.8765 -1.0000 6 7 LEU H 5.0283 -1.0000 2 7 LEU HA 4.5175 -1.0000 4 7 LEU HB2 6.8765 -1.0000 5
# Specifying I(0) only # Assignment, auto-relaxation, I(0),class 5 SER HA -1.0000 752840293.0085 6 LYS HD2 -1.0000 1260683444.4590 6 LYS QE -1.0000 2487355750.6458 7 LEU H -1.0000 438936421.8380 7 LEU HA -1.0000 224628629.6022 7 LEU HB2 -1.0000 164972110.8104