CYANA Macro: translate

Parameters

to=iupac|cyana|dyana|xplor|cns|pdb|bmrb|nmrview|off|list

(default: list)

from=iupac|cyana|dyana|pdb

(default: iupac)

Description

Defines atom and angle name translations between the nomenclature used in the standard Cyana residue library and other commonly used nomenclature systems. This allows reading of input files and writing of output files according to other nomenclature systems. Currently, xplor and nmrview nomenclature is supported. The options on, off, and clear have the same meaning as in the atom rename and angle rename commands. Without option, translate lists the currently set atom and angle name translations.

translate xplor Set Xplor translation table read xplor noe.tbl Read a Xplor distance restraint file read pdb in.pdb unknown=warning Read a PDB file with Xplor nomenclature. Avoid errors if unknown atoms are encountered. translate off Use standard Cyana nomenclature again ... translate on Switch to Xplor nomenclature write pdb out.pdb Write a PDB file with Xplor nomenclature.