CYANA Command: write seq

From CYANA Wiki
Revision as of 22:32, 3 February 2009 by Guentert (talk | contribs)
Jump to navigation Jump to search

Write sequence file

Parameters

file=filename.seq
(required) The name of the output sequence file. The filename extension ".seq" is used unless a filename extension is given explicitly.
pure
Option to write purely the residue names and residue numbers, excluding possible cis-peptide bond declarations or link statements.
append
Option to append the output to the given file. By default, an already existing output file is overwritten.

Description

Writes a file with the residue sequence in the standard [sequence file] format of the program CYANA.

Instead of the command

write seq filename.seq

the shorthand version

write filename.seq 

can be used if the default filename extension is ".seq".