Automated resonance assignment with FLYA (EMBO 2013): Difference between revisions

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Peak lists that have been prepared by automatic peak picking with the program NMRView are stored in files ''XXX''.peaks, where ''XXX'' denotes the FLYA spectrum type.
Peak lists that have been prepared by automatic peak picking with the program NMRView are stored in files ''XXX''.peaks, where ''XXX'' denotes the FLYA spectrum type.
Each peak list starts with a header that defines the experiment type and the order of dimensions. For instance, for HNCA.peaks:
# Number of dimensions 3
#FORMAT xeasy3D
#INAME 1 HN
#INAME 2 C
#INAME 3 N
#SPECTRUM HNCA  HN C N
      5  6.475  58.033  98.548 1 U  2.769E+02  0.000E+00 e 0    0    0    0
      6  6.476  62.123  98.126 1 U  2.571E+01  0.000E+00 e 0    0    0    0
      7  6.475  54.017  98.159 1 U  2.547E+01  0.000E+00 e 0    0    0    0
The first line specifies the number of dimensions (3 in this case). The '#SPECTRUM' lines gives the experiment type (HNCA)

Revision as of 22:49, 21 July 2013

We want to determine the resonance assignments and the structure of a protein.

The protein sequence is stored in the file 'demo.seq'.

The following spectra have been measured:

  • [1H,13C]-HSQC, called 'C13H1' in FLYA
  • [1H,15N]-HSQC, called 'N15H1' in FLYA
  • HNCA
  • HN(CO)CA, called 'HN_CO_CA' in FLYA
  • HNCO
  • HN(CA)CO, called 'HN_CA_CO' in FLYA
  • CBCANH
  • CBCACONH
  • HBHACONH
  • HCCH-TOCSY, called 'HCCH24' in FLYA
  • HCCH-COSY, called 'HCCH7' in FLYA
  • C(CO)NH, called 'C_CO_NH' in FLYA
  • HC(CO)NH, called 'HC_CO_NH' in FLYA

Peak lists that have been prepared by automatic peak picking with the program NMRView are stored in files XXX.peaks, where XXX denotes the FLYA spectrum type.

Each peak list starts with a header that defines the experiment type and the order of dimensions. For instance, for HNCA.peaks: 

# Number of dimensions 3
#FORMAT xeasy3D
#INAME 1 HN
#INAME 2 C
#INAME 3 N
#SPECTRUM HNCA  HN C N
      5   6.475  58.033  98.548 1 U   2.769E+02  0.000E+00 e 0     0     0     0
      6   6.476  62.123  98.126 1 U   2.571E+01  0.000E+00 e 0     0     0     0
      7   6.475  54.017  98.159 1 U   2.547E+01  0.000E+00 e 0     0     0     0

The first line specifies the number of dimensions (3 in this case). The '#SPECTRUM' lines gives the experiment type (HNCA)

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