CYANA Command: write upl: Difference between revisions
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== Parameters == | == Parameters == | ||
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Writes an upper limit distance restraint file. Optionally, the output | Writes an upper limit distance restraint file. Optionally, the output | ||
may be appended to an existing file. | may be appended to an existing file. | ||
''Write sequence file'' | |||
== Parameters == | |||
; file=''filename''.seq | |||
:(required) The name of the output sequence file. The filename extension ".seq" is used unless a filename extension is given explicitly. | |||
; pure | |||
: Option to write purely the residue names and residue numbers, excluding possible ''cis''-peptide bond declarations or '''link''' statements. | |||
; append | |||
: Option to append the output to the given file. By default, an already existing output file is overwritten. | |||
== Description == | |||
Writes a file with the currently selected upper distance limits in the standard [[upper distance limit file]] format of the program CYANA. | |||
Instead of the command | |||
write seq ''filename''.upl | |||
the shorthand version | |||
write ''filename''.upl | |||
can be used if the default filename extension is ".upl". | |||
Revision as of 23:35, 3 February 2009
Parameters
- file=filename.upl (required)
- sorted
- swapped
- xplor
- nocomments
- append
Description
Writes an upper limit distance restraint file. Optionally, the output may be appended to an existing file.
Write sequence file
Parameters
- file=filename.seq
- (required) The name of the output sequence file. The filename extension ".seq" is used unless a filename extension is given explicitly.
- pure
- Option to write purely the residue names and residue numbers, excluding possible cis-peptide bond declarations or link statements.
- append
- Option to append the output to the given file. By default, an already existing output file is overwritten.
Description
Writes a file with the currently selected upper distance limits in the standard upper distance limit file format of the program CYANA.
Instead of the command
write seq filename.upl
the shorthand version
write filename.upl
can be used if the default filename extension is ".upl".