Publications of P. Güntert: Difference between revisions

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* Lin, Y. J. & Güntert, P. 利用核磁共振光譜自動化決定蛋白質在水溶液中的三度空間結構. Automated 3D structure determination of proteins in solution using NMR spectra. Instruments Today 146, 87–93 (2005) (in Chinese)
* Lin, Y. J. & Güntert, P. 利用核磁共振光譜自動化決定蛋白質在水溶液中的三度空間結構. Automated 3D structure determination of proteins in solution using NMR spectra. Instruments Today 146, 87–93 (2005) (in Chinese)


* Iwai, H., Forrer, P., Plückthun, A. & Güntert, P. NMR solution structure of the monomeric form of the bacteriophage  capsid stabilizing protein gpD. J. Bio¬mol. NMR. 31, 351–356 (2005)
* Iwai, H., Forrer, P., Plückthun, A. & Güntert, P. NMR solution structure of the monomeric form of the bacteriophage  capsid stabilizing protein gpD. J. Biomol. NMR. 31, 351–356 (2005)


* Scott, A., Pantoja-Uceda, D., Koshiba, S., Inoue, M., Kigawa, T., Terada, T., Shirouzu, M., Tanaka, A., Sugano, S., Yokoyama, S. & Güntert, P. Solution structure of the Src homology 2 domain from the human feline sarcoma oncogene Fes. J. Biomol. NMR. 31, 357–361 (2005)
* Scott, A., Pantoja-Uceda, D., Koshiba, S., Inoue, M., Kigawa, T., Terada, T., Shirouzu, M., Tanaka, A., Sugano, S., Yokoyama, S. & Güntert, P. Solution structure of the Src homology 2 domain from the human feline sarcoma oncogene Fes. J. Biomol. NMR. 31, 357–361 (2005)
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== 2004 ==
== 2004 ==


* Scott, A., Pantoja-Uceda, D., Koshiba, S., Inoue, M., Kigawa, T., Terada, T., Shirouzu, M., Tanaka, A., Sugano, S., Yokoyama, S. & Güntert, P. NMR assignment of the SH2 domain of the human feline sarcoma oncogene FES. J. Biomol. NMR 30, 463–464 (2004). [3]
* Scott, A., Pantoja-Uceda, D., Koshiba, S., Inoue, M., Kigawa, T., Terada, T., Shirouzu, M., Tanaka, A., Sugano, S., Yokoyama, S. & Güntert, P. NMR assignment of the SH2 domain of the human feline sarcoma oncogene FES. J. Biomol. NMR 30, 463–464 (2004)
* Nameki, N., Yoneyama, M., Koshiba, S., Tochio, N., Inoue, M., Seki, E., Matsuda, T., Tomo, Y., Harada, T., Saito, K., Kobayashi, N., Yabuki, T., Aoki, M., Nunokawa, E., Matsuda, N., Sakagami, N., Terada, T., Shirouzu, M., Yoshida, M., Hirota, H., Osanai, T., Tanaka, A., Arakawa, T., Carninci, P., Kawai, J., Hayashizaki, Y., Kinoshita, K., Güntert, P., Kigawa, T. & Yokoyama, S. Solution structure of the RWD domain of the mouse GCN2 protein. Protein Sci. 13, 2089–2100 (2004). [9]
 
* Güntert, P. Automated NMR structure calculation with CYANA. Meth. Mol. Biol. 278, 353–378 (2004). [84]
* Nameki, N., Yoneyama, M., Koshiba, S., Tochio, N., Inoue, M., Seki, E., Matsuda, T., Tomo, Y., Harada, T., Saito, K., Kobayashi, N., Yabuki, T., Aoki, M., Nunokawa, E., Matsuda, N., Sakagami, N., Terada, T., Shirouzu, M., Yoshida, M., Hirota, H., Osanai, T., Tanaka, A., Arakawa, T., Carninci, P., Kawai, J., Hayashizaki, Y., Kinoshita, K., Güntert, P., Kigawa, T. & Yokoyama, S. Solution structure of the RWD domain of the mouse GCN2 protein. Protein Sci. 13, 2089–2100 (2004)
* López-Méndez, B., Pantoja-Uceda, D., Tomizawa, T., Koshiba, S., Kigawa, T., Shirouzu, M., Terada, T., Inoue, M., Yabuki, T., Aoki, M., Seki, E., Matsuda, T., Hirota, H., Yoshida, M., Tanaka, A., Osanai, T., Seki, M., Shinozaki, K., Yokoyama, S. & Güntert, P. NMR assignment of the hypothetical ENTH-VHS domain At3g16270 from Arabidopsis thaliana. J. Bio¬mol. NMR 29, 205–206 (2004). [1]
 
* Pantoja-Uceda, D., López-Méndez, B., Koshiba, S., Kigawa, T., Shirouzu, M., Terada, T., Inoue, M., Yabuki, T., Aoki, M., Seki, E., Matsuda, T., Hirota, H., Yoshida, M., Tanaka, A., Osanai, T., Seki, M., Shinozaki, K., Yokoyama, S. & Güntert, P. NMR assignment of the hypothetical rhodanese domain At4g01050 from Arabidopsis thaliana. J. Bio¬mol. NMR 29, 207–208 (2004). [3]
* Güntert, P. Automated NMR structure calculation with CYANA. Meth. Mol. Biol. 278, 353–378 (2004)
* Fernández, C., Hilty, C., Wider, G., Güntert, P. & Wüthrich, K. NMR structure of the integral membrane protein OmpX. J. Mol. Biol. 336, 1211–1221 (2004). [53]
 
* Iwai, H., Forrer, P., Plückthun, A. & Güntert, P. Assignments of 1H and 15N resonances of the bacteriophage  capsid stabilizing protein gpD. J. Bio¬mol. NMR 28, 89–90 (2004). [3]
* López-Méndez, B., Pantoja-Uceda, D., Tomizawa, T., Koshiba, S., Kigawa, T., Shirouzu, M., Terada, T., Inoue, M., Yabuki, T., Aoki, M., Seki, E., Matsuda, T., Hirota, H., Yoshida, M., Tanaka, A., Osanai, T., Seki, M., Shinozaki, K., Yokoyama, S. & Güntert, P. NMR assignment of the hypothetical ENTH-VHS domain At3g16270 from Arabidopsis thaliana. J. Bio¬mol. NMR 29, 205–206 (2004)
2003
 
* Güntert, P. Automated NMR protein structure calculation. Prog. NMR Spectrosc. 43, 105–125 (2003). [69]
* Pantoja-Uceda, D., López-Méndez, B., Koshiba, S., Kigawa, T., Shirouzu, M., Terada, T., Inoue, M., Yabuki, T., Aoki, M., Seki, E., Matsuda, T., Hirota, H., Yoshida, M., Tanaka, A., Osanai, T., Seki, M., Shinozaki, K., Yokoyama, S. & Güntert, P. NMR assignment of the hypothetical rhodanese domain At4g01050 from Arabidopsis thaliana. J. Bio¬mol. NMR 29, 207–208 (2004)
* Vanwetswinkel, S., Kriek, J., Andersen, G. R., Güntert, P., Dijk, P., Canters, G. W. & Siegal, G. Solution structure of the 162 residue C-terminal domain of human elongation factor 1B. J. Biol. Chem. 278, 43443–43451 (2003). [3]
 
* Jee, J. G. & Güntert, P. Influence of the completeness of chemical shift assignments on NMR structures obtained with automated NOE assignment. J. Struct. Funct. Genom. 4, 179–189 (2003). [22]
* Fernández, C., Hilty, C., Wider, G., Güntert, P. & Wüthrich, K. NMR structure of the integral membrane protein OmpX. J. Mol. Biol. 336, 1211–1221 (2004)
* Hilge, M., Siegal, G., Vuister, G. W., Güntert, P., Gloor, S. M. & Abrahams, J. P. ATP-induced conformational changes of the nucleotide-binding domain of Na,K-ATPase. Nat. Struct. Biol. 10, 468–474 (2003). [50]
 
* Lührs, T., Riek, R., Güntert, P. & Wüthrich, K. NMR structure of the human doppel protein. J. Mol. Biol. 326, 1549–1557 (2003). [34]
* Iwai, H., Forrer, P., Plückthun, A. & Güntert, P. Assignments of 1H and 15N resonances of the bacteriophage  capsid stabilizing protein gpD. J. Biomol. NMR 28, 89–90 (2004)
* Zahn, R., Güntert, P. & Wüthrich, K. NMR structure of a variant human prion protein with two disulfide bonds. J. Mol. Biol. 326, 225–234 (2003). [13]
 
== 2003 ==
 
* Güntert, P. Automated NMR protein structure calculation. Prog. NMR Spectrosc. 43, 105–125 (2003)
 
* Vanwetswinkel, S., Kriek, J., Andersen, G. R., Güntert, P., Dijk, P., Canters, G. W. & Siegal, G. Solution structure of the 162 residue C-terminal domain of human elongation factor 1B. J. Biol. Chem. 278, 43443–43451 (2003)
 
* Jee, J. G. & Güntert, P. Influence of the completeness of chemical shift assignments on NMR structures obtained with automated NOE assignment. J. Struct. Funct. Genom. 4, 179–189 (2003)
 
* Hilge, M., Siegal, G., Vuister, G. W., Güntert, P., Gloor, S. M. & Abrahams, J. P. ATP-induced conformational changes of the nucleotide-binding domain of Na,K-ATPase. Nat. Struct. Biol. 10, 468–474 (2003)
 
* Lührs, T., Riek, R., Güntert, P. & Wüthrich, K. NMR structure of the human doppel protein. J. Mol. Biol. 326, 1549–1557 (2003)
 
* Zahn, R., Güntert, P. & Wüthrich, K. NMR structure of a variant human prion protein with two disulfide bonds. J. Mol. Biol. 326, 225–234 (2003).  


== 2002 ==
== 2002 ==


* Herrmann, T., Güntert, P. & Wüthrich, K. Protein NMR structure determination with automated NOE-identification in the NOESY spectra using the new software ATNOS. J. Bio¬mol. NMR 24, 171–189 (2002). [92]
* Herrmann, T., Güntert, P. & Wüthrich, K. Protein NMR structure determination with automated NOE-identification in the NOESY spectra using the new software ATNOS. J. Bio¬mol. NMR 24, 171–189 (2002)
57. Güntert, P. Structure calculation using automated techniques. Meth. Principles Med. Chem. 16, 39–66 (2002). [0]
 
56. Enggist, E., Thöny-Meyer, L., Güntert, P. & Pervushin, K. NMR structure of the heme chaperone CcmE reveals a new functional motif. Structure 10, 1551–1557 (2002). [24]
* Güntert, P. Structure calculation using automated techniques. Meth. Principles Med. Chem. 16, 39–66 (2002)
55. Lee, D., Damberger, F. D., Peng, G., Horst, R., Güntert, P., Nikonova, L., Leal, W. S. & Wüthrich, K. NMR structure of the unliganded Bombyx mori pheromone-binding pro¬tein at physiological pH. FEBS Lett. 531, 314–318 (2002). [40]
 
54. Ellgaard, L., Bettendorff, P., Braun, D., Herrmann, T., Fiorito, F., Jelesarov, I., Güntert, P., Helenius, A. & Wüthrich, K. NMR Structures of 36 and 73-residue fragments of the calreticulin P-domain. J. Mol. Biol. 322, 773–784 (2002). [18]
* Enggist, E., Thöny-Meyer, L., Güntert, P. & Pervushin, K. NMR structure of the heme chaperone CcmE reveals a new functional motif. Structure 10, 1551–1557 (2002)
53. Herrmann, T., Güntert, P. & Wüthrich, K. Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA. J. Mol. Biol. 319, 209–227 (2002). [420]
52. Miura, T., Klaus, W., Ross, A., Güntert, P., Senn, H. The NMR structure of the class I human ubiquitin-conjugating enzyme 2b. J. Biomol. NMR 22, 89–92 (2002). [6]
* Lee, D., Damberger, F. D., Peng, G., Horst, R., Güntert, P., Nikonova, L., Leal, W. S. & Wüthrich, K. NMR structure of the unliganded Bombyx mori pheromone-binding pro¬tein at physiological pH. FEBS Lett. 531, 314–318 (2002)
2001
 
51. Horst, R., Damberger, F., Luginbühl, P., Güntert, P., Peng, G., Nikonova, L., Leal, W. S. & Wüthrich, K. NMR structure reveals intramolecular regulation mechanism for phero¬mone binding and release. Proc. Natl. Acad. Sci. USA 98, 14374–14379 (2001). [75]
* Ellgaard, L., Bettendorff, P., Braun, D., Herrmann, T., Fiorito, F., Jelesarov, I., Güntert, P., Helenius, A. & Wüthrich, K. NMR Structures of 36 and 73-residue fragments of the calreticulin P-domain. J. Mol. Biol. 322, 773–784 (2002)
50. Riek, R., Güntert, P., Döbeli, H., Wipf, B. & Wüthrich, K. NMR studies in aqueous solution fail to identify significant conformational differences between the monomeric forms of two Alzheimer peptides with widely different plaque-competence, A(1–40)ox and A(1– 42)ox. Eur. J. Biochem. 268, 5930–5936 (2001). [63]
49. Güntert, P. & Wüthrich, K. Sampling of conformation space in torsion angle dynamics calculations. Comp. Phys. Commun. 138, 155–169 (2001). [4]
* Herrmann, T., Güntert, P. & Wüthrich, K. Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA. J. Mol. Biol. 319, 209–227 (2002)
48. Ellgaard, L., Riek, R., Herrmann, T., Güntert, P., Braun, D., Helenius, A. & Wüthrich, K. NMR structure of the calreticulin P-domain. Proc. Natl. Acad. Sci. USA 98, 3133–3138 (2001). [76]
 
2000
* Miura, T., Klaus, W., Ross, A., Güntert, P., Senn, H. The NMR structure of the class I human ubiquitin-conjugating enzyme 2b. J. Biomol. NMR 22, 89–92 (2002)  
47. Güntert, P., Salzmann, M., Braun, D. & Wüthrich, K. Sequence-specific NMR assign¬ments of proteins by global fragment mapping with the program MAPPER. J. Biomol. NMR 18, 129–137 (2000). [50]
 
46. Calzolai, L., Lysek, D. A., Güntert, P., von Schroetter, C., Riek, R., Zahn, R. & Wüthrich, K. NMR structures of three single-residue variants of the human prion protein. Proc. Natl. Acad. Sci. USA 97, 8340–8345 (2000). [45]
== 2001 ==
45. Koradi, R., Billeter, M. & Güntert, P. Point-centered domain decomposition for paral¬lel molecular dynamics simulation. Comp. Phys. Commun. 124, 139–147 (2000). [64]
 
1999
* Horst, R., Damberger, F., Luginbühl, P., Güntert, P., Peng, G., Nikonova, L., Leal, W. S. & Wüthrich, K. NMR structure reveals intramolecular regulation mechanism for phero¬mone binding and release. Proc. Natl. Acad. Sci. USA 98, 14374–14379 (2001)
44. Riek, R., Prêcheur, B., Wang, Y., Wider, G., Güntert, P., Liu, A., Kägi, J. H. R. & Wüthrich, K. NMR structure of the sea urchin (strongylocentrotus purpuratus) metallothionein MTA. J. Mol. Biol. 291, 417–428 (1999). [30]
 
43. Güntert, P. Megahertz and Gigaflops: NMR protein structure determination and high- performance computing. Speedup 12, 47–52 (1999).
* Riek, R., Güntert, P., Döbeli, H., Wipf, B. & Wüthrich, K. NMR studies in aqueous solution fail to identify significant conformational differences between the monomeric forms of two Alzheimer peptides with widely different plaque-competence, A(1–40)ox and A(1– 42)ox. Eur. J. Biochem. 268, 5930–5936 (2001)
1998
 
42. Güntert, P., Billeter, M., Ohlenschläger, O., Brown, L. & Wüthrich, K. Conformational analysis of protein and nucleic acid fragments with the new grid search algorithm FOUND. J. Biomol. NMR 12, 543–548 (1998). [35]
* Güntert, P. & Wüthrich, K. Sampling of conformation space in torsion angle dynamics calculations. Comp. Phys. Commun. 138, 155–169 (2001)
41. Banci, L., Bertini, I., Cremonini, M. A., Gori-Savellini, G., Luchinat, C., Wüthrich, K. & Gün¬tert, P. PSEUDYANA for NMR structure calculation of paramagnetic metalloproteins us¬ing torsion angle molecular dynamics. J. Biomol. NMR 12, 553–557 (1998). [69]
 
40. Koradi, R., Billeter, M., Engeli, M., Güntert, P. & Wüthrich, K. Automated peak pick¬ing and peak integration in macromolecular NMR spectra using AUTOPSY. J. Magn. Reson. 135, 288–297 (1998). [45]
* Ellgaard, L., Riek, R., Herrmann, T., Güntert, P., Braun, D., Helenius, A. & Wüthrich, K. NMR structure of the calreticulin P-domain. Proc. Natl. Acad. Sci. USA 98, 3133–3138 (2001)
39. Güntert, P. Structure calculation of biological macromolecules from NMR data. Q. Rev. Biophys. 31, 145–237 (1998). [61]
 
38. Pellecchia, M., Güntert, P., Glockshuber, R. & Wüthrich, K. The NMR solution struc¬ture of the periplasmic chaperone FimC. Nature Struct. Biol. 5, 885–890 (1998). [27]
== 2000 ==
37. Pellecchia, M., Güntert, P., Glockshuber, R. & Wüthrich, K. Sequence-specific 1H, 15N and 13C assignments of the periplasmic chaperone FimC from Escherichia coli. J. Biomol. NMR 11, 229–230 (1998). [5]
 
1997
* Güntert, P., Salzmann, M., Braun, D. & Wüthrich, K. Sequence-specific NMR assign¬ments of proteins by global fragment mapping with the program MAPPER. J. Biomol. NMR 18, 129–137 (2000)
36. Billeter, M., Güntert, P., Luginbühl, P., Koradi, R. & Wüthrich, K. Biological macro¬molecules studied by molecular dynamics simulations. Crosscuts 6, 19–21 (1997).
 
35. Mumenthaler, C., Güntert, P., Braun, W. & Wüthrich, K. Automated combined assign¬ment of NOESY spectra and three-dimensional protein structure determination. J. Biomol. NMR 10, 351–362 (1997). [82]
* Calzolai, L., Lysek, D. A., Güntert, P., von Schroetter, C., Riek, R., Zahn, R. & Wüthrich, K. NMR structures of three single-residue variants of the human prion protein. Proc. Natl. Acad. Sci. USA 97, 8340–8345 (2000)
34. Güntert, P., Mumenthaler, C. & Wüthrich, K. Torsion angle dynamics for NMR structure calculation with the new program DYANA. J. Mol. Biol. 273, 283–298 (1997). [1362]
 
33. Ottiger, M., Zerbe, O., Güntert, P. & Wüthrich, K. The NMR solution conformation of unligated human Cyclophilin A. J. Mol. Biol. 272, 64–81 (1997). [38]
* Koradi, R., Billeter, M. & Güntert, P. Point-centered domain decomposition for paral¬lel molecular dynamics simulation. Comp. Phys. Commun. 124, 139–147 (2000)
32. Güntert, P. Calculating protein structures from NMR data. Meth. Mol. Biol. 60, 157–194 (1997). [4]
 
31. Bartels, C., Güntert, P., Billeter, M. & Wüthrich, K. GARANT—A general algorithm for resonance assignment of multidimensional nuclear magnetic resonance spectra. J. Comp. Chem. 18, 139–149 (1997). [64]
== 1999 ==
1996
 
30. Wüthrich, K., Billeter, M., Güntert, P., Luginbühl, P., Riek, R. & Wider, G. NMR stud¬ies of hydration of biological macromolecules. Faraday Discuss. 103, 245–253 (1996). [20]
* Riek, R., Prêcheur, B., Wang, Y., Wider, G., Güntert, P., Liu, A., Kägi, J. H. R. & Wüthrich, K. NMR structure of the sea urchin (''strongylocentrotus purpuratus'') metallothionein MTA. J. Mol. Biol. 291, 417–428 (1999)
29. Arbenz, P., Billeter, M., Güntert, P., Luginbühl, P., Taufer, M. & von Matt, U. Molec¬ular dynamics simulations on Cray clusters using the SCIDDLE-PVM environment. Lecture Notes in Computer Science 1156, 142–149 (1996).
 
28. Luginbühl, P., Güntert, P., Billeter, M. & Wüthrich K. The new program OPAL for mo¬lecular dynamics simulations and energy refinements of biological macromolecules. J. Biomol. NMR 8, 136–146 (1996). [118]
* Güntert, P. Megahertz and Gigaflops: NMR protein structure determination and high- performance computing. Speedup 12, 47–52 (1999)
27. Antuch, W., Güntert, P. & Wüthrich, K. Ancestral -crystallin precursor structure in a yeast killer toxin. Nature Struct. Biol. 3, 662–665 (1996). [47]
 
26. Billeter, M., Güntert, P., Luginbühl, P. & Wüthrich, K. Hydration and DNA recogni¬tion by homeodomains. Cell 85, 1057–1065 (1996). [79]
== 1998 ==
25. Bartels, C., Billeter, M., Güntert, P. & Wüthrich, K. Automated sequence-specific NMR assignment of homologous proteins using the program GARANT. J. Biomol. NMR 7, 207–213 (1996). [56]
 
24. Berndt, K. D., Güntert, P. & Wüthrich, K. Conformational sampling by NMR solution structures calculated with the program DIANA evaluated by comparison with long-time molec¬ular dynamics calculations in explicit water. Proteins 24, 304–313 (1996). [20]
* Güntert, P., Billeter, M., Ohlenschläger, O., Brown, L. & Wüthrich, K. Conformational analysis of protein and nucleic acid fragments with the new grid search algorithm FOUND. J. Biomol. NMR 12, 543–548 (1998)
1995
 
23. Bartels, C., Güntert, P. & Wüthrich, K. IFLAT—A new automatic baseline-correction method for multidimensional NMR spectra with strong solvent signals. J. Magn. Reson. A 117, 330–333 (1995). [13]
* Banci, L., Bertini, I., Cremonini, M. A., Gori-Savellini, G., Luchinat, C., Wüthrich, K. & Gün¬tert, P. PSEUDYANA for NMR structure calculation of paramagnetic metalloproteins us¬ing torsion angle molecular dynamics. J. Biomol. NMR 12, 553–557 (1998)
22. Brunne, R. M., Berndt, K. D., Güntert, P., Wüthrich, K. & van Gunsteren, W. F. Struc¬ture and internal dynamics of the bovine pancreatic trypsin inhibitor in aqueous solution from long-time molecular dynamics simulations. Proteins 23, 49–62 (1995). [40]
 
21. Bartels, C., Xia, T., Billeter, M., Güntert, P. & Wüthrich, K. The program XEASY for computer-supported NMR spectral analysis of biological macromolecules. J. Biomol. NMR 6, 1–10 (1995). [599]
* Koradi, R., Billeter, M., Engeli, M., Güntert, P. & Wüthrich, K. Automated peak pick¬ing and peak integration in macromolecular NMR spectra using AUTOPSY. J. Magn. Reson. 135, 288–297 (1998)
1994
 
20. Güntert, P. Computer–supported protein structure determination by NMR. In Statisti¬cal mechanics, protein structure and protein–substrate interactions (Ed. S. Doniach), Plenum Press, New York, pp. 197–207 (1994).
* Güntert, P. Structure calculation of biological macromolecules from NMR data. Q. Rev. Biophys. 31, 145–237 (1998)
19. Antuch, W., Güntert, P., Billeter, M., Hawthorne, T., Grossenbacher, H. & Wüthrich, K. NMR solution structure of the recombinant tick anticoagulant protein (rTAP), a factor Xa inhibitor from the tick Ornithodoros moubata. FEBS Lett. 352, 251–257 (1994). [35]
 
1993
* Pellecchia, M., Güntert, P., Glockshuber, R. & Wüthrich, K. The NMR solution struc¬ture of the periplasmic chaperone FimC. Nature Struct. Biol. 5, 885–890 (1998)
18. Wüthrich, K., Güntert, P. & Berndt, K. D. Computer–supported NMR structure deter¬mination of proteins in solution illustrated with studies of protein proteinase inhibitors. In Pro¬ceedings of the workshop on innovations on proteases and their inhibitors: fundamental and applied aspects (Ed. F. X. Avilés), de Gruyter, Berlin (1993).
 
17. Berndt, K. D., Güntert, P. & Wüthrich, K. The NMR solution structure of dendrotoxin K from the venom of Dendroaspis polylepis polylepis. J. Mol. Biol. 234, 735–750 (1993). [53]
* Pellecchia, M., Güntert, P., Glockshuber, R. & Wüthrich, K. Sequence-specific 1H, 15N and 13C assignments of the periplasmic chaperone FimC from Escherichia coli. J. Biomol. NMR 11, 229–230 (1998)
16. Güntert, P., Berndt, K. D. & Wüthrich, K. The program ASNO for computer-supported collection of NOE upper distance constraints as input for protein structure determination. J. Biomol. NMR 3, 601–606 (1993). [64]
 
15. Güntert, P., Schaefer, N., Otting, G. & Wüthrich K. POMA, a complete Mathematica implementation of the NMR product operator formalism. J. Magn. Reson. A 101, 103–105 (1993). [45]
== 1997 ==
14. Szyperski, T., Luginbühl, P., Otting, G., Güntert, P. & Wüthrich, K. Protein dynamics studied by rotating frame 15N spin relaxation times. J. Biomol. NMR 3, 151–164 (1993). [166]
 
13. Güntert, P. Neue Rechenverfahren für die Proteinstrukturbestimmung mit Hilfe der magnetischen Kernspinresonanz, Ph.D. Thesis ETH 10135, http://e-collection.ethbib.ethz.ch/show?type=diss&nr=10135 (1993). [3]
* Billeter, M., Güntert, P., Luginbühl, P., Koradi, R. & Wüthrich, K. Biological macro¬molecules studied by molecular dynamics simulations. Crosscuts 6, 19–21 (1997)
1992
 
12. Szyperski, T., Güntert, P., Stone, S. R. & Wüthrich, K. NMR solution structure of hiru¬din(1–51) and comparison with corresponding three-dimensional structures determined using the complete 65-residue hirudin polypeptide chain. J. Mol. Biol. 228, 1193–1205 (1992). [38]
* Mumenthaler, C., Güntert, P., Braun, W. & Wüthrich, K. Automated combined assign¬ment of NOESY spectra and three-dimensional protein structure determination. J. Biomol. NMR 10, 351–362 (1997)
11. Szyperski, T., Güntert, P., Stone, S. R., Tulinsky, A., Bode, W., Huber, R. & Wüthrich, K. Impact of protein-protein contacts on the conformation of thrombin-bound hirudin studied by comparison with the NMR solution structure of hirudin(1–51). J. Mol. Biol. 228, 1206–1211 (1992). [21]
 
10. Güntert, P., Dötsch, V., Wider, G. & Wüthrich K. Processing of multi-dimensional NMR data with the new software PROSA. J. Biomol. NMR 2, 619–629 (1992). [206]
* Güntert, P., Mumenthaler, C. & Wüthrich, K. Torsion angle dynamics for NMR structure calculation with the new program DYANA. J. Mol. Biol. 273, 283–298 (1997)
9. Berndt, K. D., Güntert, P., Orbons, L. P. M. & Wüthrich, K. Determination of a high-quality NMR solution structure of the bovine pancreatic trypsin inhibitor (BPTI) and compari¬son with three crystal structures. J. Mol. Biol. 227, 757–775 (1992). [153]
 
8. Szyperski, T., Güntert, P., Otting, G. & Wüthrich, K. Determination of scalar coupling constants by inverse Fourier transformation of in-phase multiplets. J. Magn. Reson. 99, 552– 560 (1992). [178]
* Ottiger, M., Zerbe, O., Güntert, P. & Wüthrich, K. The NMR solution conformation of unligated human Cyclophilin A. J. Mol. Biol. 272, 64–81 (1997)
7. Güntert, P. & Wüthrich, K. FLATT—A new procedure for high-quality baseline cor¬rection of two- and higher-dimensional NMR spectra. J. Magn. Reson. 96, 403–407 (1992). [83]
 
1991
* Güntert, P. Calculating protein structures from NMR data. Meth. Mol. Biol. 60, 157–194 (1997)
6. Mertz, J. E., Güntert, P., Wüthrich, K. & Braun, W. Complete relaxation matrix refine¬ment of NMR structures of proteins using analytically calculated dihedral angle derivatives of NOE intensities. J. Biomol. NMR 1, 257–269 (1991). [35]
 
5. Eccles, C., Güntert, P., Billeter, M. & Wüthrich, K. Efficient analysis of protein 2D NMR spectra using the software package EASY. J. Biomol. NMR 1, 111–130 (1991). [234]
* Bartels, C., Güntert, P., Billeter, M. & Wüthrich, K. GARANT—A general algorithm for resonance assignment of multidimensional nuclear magnetic resonance spectra. J. Comp. Chem. 18, 139–149 (1997)
4. Güntert, P. & Wüthrich, K. Improved efficiency of protein structure calculations from NMR data using the program DIANA with redundant dihedral angle constraints. J. Biomol. NMR 1, 447–456 (1991). [280]
 
3. Güntert, P., Braun, W. & Wüthrich, K. Efficient computation of three-dimensional pro¬tein structures in solution from nuclear magnetic resonance data using the program DIANA and the supporting programs CALIBA, HABAS and GLOMSA. J. Mol. Biol. 217, 517–530 (1991). [786]
== 1996 ==
2. Güntert, P., Qian, Y. Q., Otting, G., Müller, M., Gehring, W. J. & Wüthrich K. Structure determination of the Antp(C39S) homeodomain from nuclear magnetic resonance data in so¬lution using a novel strategy for the structure calculation with the programs DIANA, CALIBA, HABAS and GLOMSA. J. Mol. Biol. 217, 531–540 (1991). [108]
 
1989
* Wüthrich, K., Billeter, M., Güntert, P., Luginbühl, P., Riek, R. & Wider, G. NMR stud¬ies of hydration of biological macromolecules. Faraday Discuss. 103, 245–253 (1996)
1. Güntert, P., Braun, W., Billeter, M. & Wüthrich, K. Automated stereospecific 1H NMR assignments and their impact on the precision of protein structure determinations in solution. J. Amer. Chem. Soc. 111, 3997–4004 (1989). [219]
 
* Arbenz, P., Billeter, M., Güntert, P., Luginbühl, P., Taufer, M. & von Matt, U. Molec¬ular dynamics simulations on Cray clusters using the SCIDDLE-PVM environment. Lecture Notes in Computer Science 1156, 142–149 (1996)
 
* Luginbühl, P., Güntert, P., Billeter, M. & Wüthrich K. The new program OPAL for mo¬lecular dynamics simulations and energy refinements of biological macromolecules. J. Biomol. NMR 8, 136–146 (1996)
 
* Antuch, W., Güntert, P. & Wüthrich, K. Ancestral -crystallin precursor structure in a yeast killer toxin. Nature Struct. Biol. 3, 662–665 (1996)
 
* Billeter, M., Güntert, P., Luginbühl, P. & Wüthrich, K. Hydration and DNA recogni¬tion by homeodomains. Cell 85, 1057–1065 (1996)
 
* Bartels, C., Billeter, M., Güntert, P. & Wüthrich, K. Automated sequence-specific NMR assignment of homologous proteins using the program GARANT. J. Biomol. NMR 7, 207–213 (1996)
 
* Berndt, K. D., Güntert, P. & Wüthrich, K. Conformational sampling by NMR solution structures calculated with the program DIANA evaluated by comparison with long-time molec¬ular dynamics calculations in explicit water. Proteins 24, 304–313 (1996)
 
== 1995 ==
 
* Bartels, C., Güntert, P. & Wüthrich, K. IFLAT—A new automatic baseline-correction method for multidimensional NMR spectra with strong solvent signals. J. Magn. Reson. A 117, 330–333 (1995)
 
* Brunne, R. M., Berndt, K. D., Güntert, P., Wüthrich, K. & van Gunsteren, W. F. Struc¬ture and internal dynamics of the bovine pancreatic trypsin inhibitor in aqueous solution from long-time molecular dynamics simulations. Proteins 23, 49–62 (1995)
 
* Bartels, C., Xia, T., Billeter, M., Güntert, P. & Wüthrich, K. The program XEASY for computer-supported NMR spectral analysis of biological macromolecules. J. Biomol. NMR 6, 1–10 (1995)
 
== 1994 ==
 
* Güntert, P. Computer–supported protein structure determination by NMR. In Statisti¬cal mechanics, protein structure and protein–substrate interactions (Ed. S. Doniach), Plenum Press, New York, pp. 197–207 (1994)
 
* Antuch, W., Güntert, P., Billeter, M., Hawthorne, T., Grossenbacher, H. & Wüthrich, K. NMR solution structure of the recombinant tick anticoagulant protein (rTAP), a factor Xa inhibitor from the tick Ornithodoros moubata. FEBS Lett. 352, 251–257 (1994)
 
 
== 1993 ==
 
* Wüthrich, K., Güntert, P. & Berndt, K. D. Computer–supported NMR structure deter¬mination of proteins in solution illustrated with studies of protein proteinase inhibitors. In Pro¬ceedings of the workshop on innovations on proteases and their inhibitors: fundamental and applied aspects (Ed. F. X. Avilés), de Gruyter, Berlin (1993)
* Berndt, K. D., Güntert, P. & Wüthrich, K. The NMR solution structure of dendrotoxin K from the venom of Dendroaspis polylepis polylepis. J. Mol. Biol. 234, 735–750 (1993)
 
* Güntert, P., Berndt, K. D. & Wüthrich, K. The program ASNO for computer-supported collection of NOE upper distance constraints as input for protein structure determination. J. Biomol. NMR 3, 601–606 (1993)
 
* Güntert, P., Schaefer, N., Otting, G. & Wüthrich K. POMA, a complete Mathematica implementation of the NMR product operator formalism. J. Magn. Reson. A 101, 103–105 (1993)
 
* Szyperski, T., Luginbühl, P., Otting, G., Güntert, P. & Wüthrich, K. Protein dynamics studied by rotating frame 15N spin relaxation times. J. Biomol. NMR 3, 151–164 (1993)
 
* Güntert, P. Neue Rechenverfahren für die Proteinstrukturbestimmung mit Hilfe der magnetischen Kernspinresonanz, Ph.D. Thesis ETH 10135, http://e-collection.ethbib.ethz.ch/show?type=diss&nr=10135 (1993)
 
== 1992 ==
 
* Szyperski, T., Güntert, P., Stone, S. R. & Wüthrich, K. NMR solution structure of hiru¬din(1–51) and comparison with corresponding three-dimensional structures determined using the complete 65-residue hirudin polypeptide chain. J. Mol. Biol. 228, 1193–1205 (1992)
 
* Szyperski, T., Güntert, P., Stone, S. R., Tulinsky, A., Bode, W., Huber, R. & Wüthrich, K. Impact of protein-protein contacts on the conformation of thrombin-bound hirudin studied by comparison with the NMR solution structure of hirudin(1–51). J. Mol. Biol. 228, 1206–1211 (1992)
 
* Güntert, P., Dötsch, V., Wider, G. & Wüthrich K. Processing of multi-dimensional NMR data with the new software PROSA. J. Biomol. NMR 2, 619–629 (1992)
 
* Berndt, K. D., Güntert, P., Orbons, L. P. M. & Wüthrich, K. Determination of a high-quality NMR solution structure of the bovine pancreatic trypsin inhibitor (BPTI) and compari¬son with three crystal structures. J. Mol. Biol. 227, 757–775 (1992)
 
* Szyperski, T., Güntert, P., Otting, G. & Wüthrich, K. Determination of scalar coupling constants by inverse Fourier transformation of in-phase multiplets. J. Magn. Reson. 99, 552– 560 (1992)
 
* Güntert, P. & Wüthrich, K. FLATT—A new procedure for high-quality baseline cor¬rection of two- and higher-dimensional NMR spectra. J. Magn. Reson. 96, 403–407 (1992)
 
== 1991 ==
 
* Mertz, J. E., Güntert, P., Wüthrich, K. & Braun, W. Complete relaxation matrix refine¬ment of NMR structures of proteins using analytically calculated dihedral angle derivatives of NOE intensities. J. Biomol. NMR 1, 257–269 (1991)
 
* Eccles, C., Güntert, P., Billeter, M. & Wüthrich, K. Efficient analysis of protein 2D NMR spectra using the software package EASY. J. Biomol. NMR 1, 111–130 (1991)
 
* Güntert, P. & Wüthrich, K. Improved efficiency of protein structure calculations from NMR data using the program DIANA with redundant dihedral angle constraints. J. Biomol. NMR 1, 447–456 (1991)
 
* Güntert, P., Braun, W. & Wüthrich, K. Efficient computation of three-dimensional pro¬tein structures in solution from nuclear magnetic resonance data using the program DIANA and the supporting programs CALIBA, HABAS and GLOMSA. J. Mol. Biol. 217, 517–530 (1991)
 
* Güntert, P., Qian, Y. Q., Otting, G., Müller, M., Gehring, W. J. & Wüthrich K. Structure determination of the Antp(C39S) homeodomain from nuclear magnetic resonance data in so¬lution using a novel strategy for the structure calculation with the programs DIANA, CALIBA, HABAS and GLOMSA. J. Mol. Biol. 217, 531–540 (1991)
 
== 1989 ==
 
* Güntert, P., Braun, W., Billeter, M. & Wüthrich, K. Automated stereospecific 1H NMR assignments and their impact on the precision of protein structure determinations in solution. J. Amer. Chem. Soc. 111, 3997–4004 (1989)

Revision as of 11:33, 6 December 2008

In press/accepted

  • He, F., Dang, W., Saito, K., Watanabe, S., Kobayashi, N., Güntert, P., Kigawa, T, Tanaka, A., Muto, Y. & Yokoyama, S. Solution structure of the cysteine-rich domain in Fn14, a member of the tumor necrosis factor receptor superfamily. Protein Sci.
  • He, F., Dang, W., Abe, C., Tsuda, K., Inoue, M., Watanabe, S., Kobayashi, N., Kigawa, T, Matsuda, T., Yabuki, T., Aoki, M., Seki, E., Harada, T., Tomabechi, Y., Terada, T., Shirouzu, M., Tanaka, A., Güntert, P., Muto, Y. & Yokoyama, S. Solution structure of the RNA binding domain in the human muscleblind-like protein 2. Protein Sci.

2009

  • Ohnishi, S. Pääkkönen, K., Koshiba, S., Tochio, N., Sato, M., Kobayashi, N., Harada, T., Watanabe, S., Muto, Y., Güntert, P., Tanaka, A., Kigawa, T. & Yokoyama, S. Solution structure of the GUCT domain from human RNA helicase II/Guβ reveals the RRM fold, but implausible RNA interactions. Proteins 74, 133–144 (2009)

2008

  • Takeda, M., Sugimori, N., Torizawa, T., Terauchi, T., Ono, A. M., Yagi, H., Yamaguchi, Y., Kato, K., Ikeya, T., Güntert, P., Aceti, D. J., Markley, J. L. & Kainosho, M. Structure of the putative 32 kDa myrosinase binding protein from Arabidopsis (At3g16450.1) as determined by the SAIL-NMR method. FEBS J. 275, 5873–5884 (2008)
  • Yoshida, H., Furuya, N., Lin, Y. J., Güntert, P., Komano, T. & Kainosho, M. Structural basis of the role of the NikA ribbon-helix-helix domain in initiating bacterial conjugation. J. Mol. Biol. 384, 690–701 (2008)
  • Lin, Y. J., Umehara, T., Inoue, M., Saito, K., Kigawa, T., Jang, M. K., Ozato, K., Yokoyama, S., Padmanabhan, B., Güntert, P. Solution structure of the extraterminal domain of the bromodomain-containing protein BRD4. Protein Sci. 17, 2174–2179 (2008)
  • Koglin, A., Löhr, F., Bernhard, F., Rogov, V. R., Frueh, D. P., Strieter, E. R., Mofid, M. R., Güntert, P., Wagner, G., Walsh, C. T., Marahiel, M. A. & Dötsch, V. Structural basis for the selectivity of the external thioesterase of the surfactin-synthetase. Nature 454, 907–911 (2008)
  • Nagata, T., Suzuki, S., Endo, R., Shirouzu, M., Terada, T., Inoue, M., Kigawa, T, Güntert, P., Hayashizaki, Y., Muto, Y. & Yokoyama, S. The RRM domain of poly(A)-specific ribonuclease (PARN) has a non-canonical binding site for mRNA cap analog recognition. Nucl. Acids Res. 36, 4754–4767 (2008)
  • Takeda, M., Chang, C. K., Ikeya, T., Güntert, P., Chang, Y. H., Hsu, Y. L., Huang, T. H. & Kainosho, M. Solution structure of the C-terminal dimerization domain of SARS coronavirus nucleocapsid protein determined by the SAIL-NMR method. J. Mol. Biol. 380, 608–622 (2008)
  • Reckel, S., Sobhanifar, S., Schneider, B., Junge, F., Schwarz, D., Durst, F., Löhr, F., Güntert, P., Bernhard, F. & Dötsch, V. Transmembrane segment enhanced labeling as a tool for the backbone assignment of helical membrane proteins. Proc. Natl. Acad. Sci. USA 105, 8262–8267 (2008)
  • Kuwasako, K., Takahashi, M., Tochio, N., Abe, C., Tsuda, K., Inoue, M., Terada, T., Shirouzu, M., Kobayashi, N., Kigawa, T., Taguchi, S., Tanaka, A., Hayashizaki, Y., Güntert, P., Muto, Y. & Yokoyama, S. Solution structure of the second RNA recognition motif (RRM) domain of murine T cell intracellular antigen-1 (TIA-1) and its RNA recognition mode. Biochemistry 47, 6437–6450 (2008)
  • Kuwasako, K., Dohmae, N., Inoue, M., Shirouzu, M., Taguchi, S., Güntert, P., Séraphin, B., Muto, Y. & Yokoyama, S. Complex assembly mechanism and an RNA-binding mode of the human p14-SF3b155 spliceosomal protein complex identified by NMR solution structure and functional analyses. Proteins 71, 1617–1636 (2008)

2007

  • Ikeya, T., Güntert, P. & Kainosho, M. NMRによる蛋白質構造決定の自動化. In 計算シミュレーションと分析データ解析, Maruzen, Tokyo, pp. 148–166 (2007) (in Japanese)
  • Takeda, M., Ikeya, T., Güntert, P. & Kainosho, M. Automated structure determination of proteins with the SAIL-FLYA NMR method. Nature Protocols 2, 2896–2902 (2007)
  • Kobayashi, N., Iwahara, J., Koshiba, S., Tomizawa, T., Tochio, N., Güntert, P., Kigawa, T. & Yokoyama, S. KUJIRA, a package of integrated modules for systematic and interactive analysis of NMR data directed to high-throughput NMR structure studies. J. Biomol. NMR 39, 31–52 (2007)
  • Hwang, E., Ryu, K. S., Pääkkönen, K., Güntert, P., Cheong, H. K., Lim, D. S., Lee, J. O., Jeon, Y. H. & Cheong, C. Structural insight into dimeric interaction of the SARAH domains from Mst1 and RASSF family proteins in the apoptosis pathway. Proc. Natl. Acad. Sci. USA. 104, 9236–9241 (2007)
  • Ohnishi, S. Güntert, P., Koshiba, S., Tomizawa, T., Akasaka, R., Tochio, N., Sato, M., Inoue, M., Harada, T., Watanabe, S., Tanaka, T., Shirouzu, M., Kigawa, T. & Yokoyama, S. Solution structure of an atypical WW domain in a novel -clam-like dimeric form. FEBS Lett. 581, 462–468 (2007)

2006

  • Jurt, S., Aemissegger, A., Güntert, P., Zerbe, O. & Hilvert, D. A photoswitchable miniprotein based on the sequence of avian pancreatic polypeptide. Angew. Chem. Int. Ed. 45, 6297-6300 (2006)
  • Kuwasako, K., He, F., Inoue, M., Tanaka, A., Sugano, S., Güntert, P., Muto, Y. & Yokoyama, S. Solution structures of the SURP domains and the subunit-assembly mechanism within the splicing factor SF3a complex in 17S U2 snRNP. Structure 14, 1677–1689 (2006)
  • López-Méndez, B. & Güntert, P. Automated protein structure determination from NMR spectra. J. Am. Chem. Soc. 128, 13112–13122 (2006)
  • Pääkkönen, K., Tossavainen, H., Permi, P., Rakkolainen, H., Rauvala, H., Raulo, E., Kilpeläinen, I. & Güntert, P. Solution structures of the first and fourth TSR domains of F-spondin. Proteins 64, 665–672 (2006)
  • Kainosho, M. & Güntert, P. 高分子量タンパク質のNMR構造決定-より速く、より正確に: タンパク質NMRの常識を覆す革新技術SAIL法. Stereo-array isotope labeling for faster and more accurate NMR structure determinations of high molecular weight proteins. Biotechnology J. (Tokyo) 6, 467–470 (2006) (in Japanese)
  • Scott, A., López-Méndez, B. & Güntert, P. Fully automated structure determinations of the Fes SH2 domain using different sets of NMR spectra. Magn. Reson. Chem. 44, S83–S88 (2006)
  • Ikeya, T., Terauchi, T., Güntert, P., Kainosho, M. Evaluation of stereo-array isotope labeling (SAIL) patterns for automated structural analysis of proteins with CYANA. Magn. Reson. Chem. 44, S152–S157 (2006)
  • Hamada, T., Ito, Y., Abe, T., Hayashi, F., Güntert, P., Inoue, M., Kigawa, T., Terada, T., Shirouzu, M., Yoshida, M., Tanaka, A., Sugano, S., Yokoyama, S. & Hirota, H. Solution structure of the antifreeze-like domain of human sialic acid synthase. Protein Sci. 15, 1010–1016 (2006)
  • Aachmann, F. L., Svanem, B. I. G., Güntert, P., Petersen, S. B., Valla, S. & Wimmer, R. NMR structure of the R-module - A parallel β-roll subunit from an Azotobacter vinelandii mannuronan C-5 epimerase. J. Biol. Chem. 281, 7350–7356 (2006)
  • Kainosho, M., Torizawa, T., Iwashita, Y., Terauchi, T., Ono, A. M. & Güntert, P. Optimal isotope labeling for NMR protein structure determinations. Nature 440, 52–57 (2006)
  • Güntert, P. Symbolic NMR product operator calculations. Int. J. Quant. Chem. 106, 344–350 (2006)

2005

  • Li, H., Inoue, M., Yabuki, T., Aoki, M., Seki, E., Matsuda, T., Nunokawa, E., Motoda, Y., Kobayashi, A., Terada, T., Shirouzu, M., Koshiba, S., Lin, Y. J., Güntert, P., Suzuki, H., Hayashizaki, Y., Kigawa, T. & Yokoyama, S. Solution structure of the mouse enhancer of rudimentary protein reveals a novel fold. J. Biomol. NMR 32, 329–334 (2005)
  • Lin, Y. J. & Güntert, P. 利用核磁共振光譜自動化決定蛋白質在水溶液中的三度空間結構. Automated 3D structure determination of proteins in solution using NMR spectra. Instruments Today 146, 87–93 (2005) (in Chinese)
  • Iwai, H., Forrer, P., Plückthun, A. & Güntert, P. NMR solution structure of the monomeric form of the bacteriophage  capsid stabilizing protein gpD. J. Biomol. NMR. 31, 351–356 (2005)
  • Scott, A., Pantoja-Uceda, D., Koshiba, S., Inoue, M., Kigawa, T., Terada, T., Shirouzu, M., Tanaka, A., Sugano, S., Yokoyama, S. & Güntert, P. Solution structure of the Src homology 2 domain from the human feline sarcoma oncogene Fes. J. Biomol. NMR. 31, 357–361 (2005)
  • Nederveen, A. J., Doreleijers, J. F., Vranken, W., Miller, Z., Spronk, C. A. E. M., Nabuurs, S. B., Güntert, P., Livny, M., Markley, J. L., Nilges, M., Ulrich, E. L., Kaptein, R. & Bonvin, A. M. J. J. RECOORD: a REcalculated COORdinates Database of 500+ proteins from the PDB using restraints from the BioMagResBank. Proteins 59, 662–672 (2005)
  • Nameki, N., Tochio, N., Koshiba, S., Inoue, M., Yabuki, T., Aoki, M., Seki, E., Matsuda, T., Fujikura, Y., Saito, M., Ikari, M., Watanabe, M., Terada, T., Shirouzu, M., Yoshida, M., Hirota, H., Tanaka, A., Hayashizaki, Y., Güntert, P., Kigawa, T. & Yokoyama, S. Solution structure of the PWWP domain of the hepatoma-derived growth factor family. Protein Sci. 14, 756–764 (2005)
  • Lysek, D. A., Schorn, C., Nivon, L. G., Esteve-Moya, V., Christen, B., Calzolai, L., von Schroetter, C., Fiorito, F., Herrmann, T., Güntert, P. & Wüthrich, K. Prion protein NMR structures of cat, dog, pig and sheep. Proc. Natl. Acad. Sci. USA 102, 640–645 (2005)
  • Calzolai, L., Lysek, D. A., Pérez, D. R., Güntert, P. & Wüthrich, K. Prion protein NMR structures of chicken, turtle and frog. Proc. Natl. Acad. Sci. USA 102, 651–655 (2005)
  • Pantoja-Uceda, D., López-Méndez, B., Koshiba, S., Inoue, M., Kigawa, T., Terada, T., Shirouzu, M., Tanaka, A., Seki, M., Shinozaki, K., Yokoyama, S. & Güntert, P. Solution structure of the rhodanese homology domain At4g01050(175–295) from Arabidopsis thaliana. Protein Sci. 14, 224–230 (2005)

2004

  • Scott, A., Pantoja-Uceda, D., Koshiba, S., Inoue, M., Kigawa, T., Terada, T., Shirouzu, M., Tanaka, A., Sugano, S., Yokoyama, S. & Güntert, P. NMR assignment of the SH2 domain of the human feline sarcoma oncogene FES. J. Biomol. NMR 30, 463–464 (2004)
  • Nameki, N., Yoneyama, M., Koshiba, S., Tochio, N., Inoue, M., Seki, E., Matsuda, T., Tomo, Y., Harada, T., Saito, K., Kobayashi, N., Yabuki, T., Aoki, M., Nunokawa, E., Matsuda, N., Sakagami, N., Terada, T., Shirouzu, M., Yoshida, M., Hirota, H., Osanai, T., Tanaka, A., Arakawa, T., Carninci, P., Kawai, J., Hayashizaki, Y., Kinoshita, K., Güntert, P., Kigawa, T. & Yokoyama, S. Solution structure of the RWD domain of the mouse GCN2 protein. Protein Sci. 13, 2089–2100 (2004)
  • Güntert, P. Automated NMR structure calculation with CYANA. Meth. Mol. Biol. 278, 353–378 (2004)
  • López-Méndez, B., Pantoja-Uceda, D., Tomizawa, T., Koshiba, S., Kigawa, T., Shirouzu, M., Terada, T., Inoue, M., Yabuki, T., Aoki, M., Seki, E., Matsuda, T., Hirota, H., Yoshida, M., Tanaka, A., Osanai, T., Seki, M., Shinozaki, K., Yokoyama, S. & Güntert, P. NMR assignment of the hypothetical ENTH-VHS domain At3g16270 from Arabidopsis thaliana. J. Bio¬mol. NMR 29, 205–206 (2004)
  • Pantoja-Uceda, D., López-Méndez, B., Koshiba, S., Kigawa, T., Shirouzu, M., Terada, T., Inoue, M., Yabuki, T., Aoki, M., Seki, E., Matsuda, T., Hirota, H., Yoshida, M., Tanaka, A., Osanai, T., Seki, M., Shinozaki, K., Yokoyama, S. & Güntert, P. NMR assignment of the hypothetical rhodanese domain At4g01050 from Arabidopsis thaliana. J. Bio¬mol. NMR 29, 207–208 (2004)
  • Fernández, C., Hilty, C., Wider, G., Güntert, P. & Wüthrich, K. NMR structure of the integral membrane protein OmpX. J. Mol. Biol. 336, 1211–1221 (2004)
  • Iwai, H., Forrer, P., Plückthun, A. & Güntert, P. Assignments of 1H and 15N resonances of the bacteriophage  capsid stabilizing protein gpD. J. Biomol. NMR 28, 89–90 (2004)

2003

  • Güntert, P. Automated NMR protein structure calculation. Prog. NMR Spectrosc. 43, 105–125 (2003)
  • Vanwetswinkel, S., Kriek, J., Andersen, G. R., Güntert, P., Dijk, P., Canters, G. W. & Siegal, G. Solution structure of the 162 residue C-terminal domain of human elongation factor 1B. J. Biol. Chem. 278, 43443–43451 (2003)
  • Jee, J. G. & Güntert, P. Influence of the completeness of chemical shift assignments on NMR structures obtained with automated NOE assignment. J. Struct. Funct. Genom. 4, 179–189 (2003)
  • Hilge, M., Siegal, G., Vuister, G. W., Güntert, P., Gloor, S. M. & Abrahams, J. P. ATP-induced conformational changes of the nucleotide-binding domain of Na,K-ATPase. Nat. Struct. Biol. 10, 468–474 (2003)
  • Lührs, T., Riek, R., Güntert, P. & Wüthrich, K. NMR structure of the human doppel protein. J. Mol. Biol. 326, 1549–1557 (2003)
  • Zahn, R., Güntert, P. & Wüthrich, K. NMR structure of a variant human prion protein with two disulfide bonds. J. Mol. Biol. 326, 225–234 (2003).

2002

  • Herrmann, T., Güntert, P. & Wüthrich, K. Protein NMR structure determination with automated NOE-identification in the NOESY spectra using the new software ATNOS. J. Bio¬mol. NMR 24, 171–189 (2002)
  • Güntert, P. Structure calculation using automated techniques. Meth. Principles Med. Chem. 16, 39–66 (2002)
  • Enggist, E., Thöny-Meyer, L., Güntert, P. & Pervushin, K. NMR structure of the heme chaperone CcmE reveals a new functional motif. Structure 10, 1551–1557 (2002)
  • Lee, D., Damberger, F. D., Peng, G., Horst, R., Güntert, P., Nikonova, L., Leal, W. S. & Wüthrich, K. NMR structure of the unliganded Bombyx mori pheromone-binding pro¬tein at physiological pH. FEBS Lett. 531, 314–318 (2002)
  • Ellgaard, L., Bettendorff, P., Braun, D., Herrmann, T., Fiorito, F., Jelesarov, I., Güntert, P., Helenius, A. & Wüthrich, K. NMR Structures of 36 and 73-residue fragments of the calreticulin P-domain. J. Mol. Biol. 322, 773–784 (2002)
  • Herrmann, T., Güntert, P. & Wüthrich, K. Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA. J. Mol. Biol. 319, 209–227 (2002)
  • Miura, T., Klaus, W., Ross, A., Güntert, P., Senn, H. The NMR structure of the class I human ubiquitin-conjugating enzyme 2b. J. Biomol. NMR 22, 89–92 (2002)

2001

  • Horst, R., Damberger, F., Luginbühl, P., Güntert, P., Peng, G., Nikonova, L., Leal, W. S. & Wüthrich, K. NMR structure reveals intramolecular regulation mechanism for phero¬mone binding and release. Proc. Natl. Acad. Sci. USA 98, 14374–14379 (2001)
  • Riek, R., Güntert, P., Döbeli, H., Wipf, B. & Wüthrich, K. NMR studies in aqueous solution fail to identify significant conformational differences between the monomeric forms of two Alzheimer peptides with widely different plaque-competence, A(1–40)ox and A(1– 42)ox. Eur. J. Biochem. 268, 5930–5936 (2001)
  • Güntert, P. & Wüthrich, K. Sampling of conformation space in torsion angle dynamics calculations. Comp. Phys. Commun. 138, 155–169 (2001)
  • Ellgaard, L., Riek, R., Herrmann, T., Güntert, P., Braun, D., Helenius, A. & Wüthrich, K. NMR structure of the calreticulin P-domain. Proc. Natl. Acad. Sci. USA 98, 3133–3138 (2001)

2000

  • Güntert, P., Salzmann, M., Braun, D. & Wüthrich, K. Sequence-specific NMR assign¬ments of proteins by global fragment mapping with the program MAPPER. J. Biomol. NMR 18, 129–137 (2000)
  • Calzolai, L., Lysek, D. A., Güntert, P., von Schroetter, C., Riek, R., Zahn, R. & Wüthrich, K. NMR structures of three single-residue variants of the human prion protein. Proc. Natl. Acad. Sci. USA 97, 8340–8345 (2000)
  • Koradi, R., Billeter, M. & Güntert, P. Point-centered domain decomposition for paral¬lel molecular dynamics simulation. Comp. Phys. Commun. 124, 139–147 (2000)

1999

  • Riek, R., Prêcheur, B., Wang, Y., Wider, G., Güntert, P., Liu, A., Kägi, J. H. R. & Wüthrich, K. NMR structure of the sea urchin (strongylocentrotus purpuratus) metallothionein MTA. J. Mol. Biol. 291, 417–428 (1999)
  • Güntert, P. Megahertz and Gigaflops: NMR protein structure determination and high- performance computing. Speedup 12, 47–52 (1999)

1998

  • Güntert, P., Billeter, M., Ohlenschläger, O., Brown, L. & Wüthrich, K. Conformational analysis of protein and nucleic acid fragments with the new grid search algorithm FOUND. J. Biomol. NMR 12, 543–548 (1998)
  • Banci, L., Bertini, I., Cremonini, M. A., Gori-Savellini, G., Luchinat, C., Wüthrich, K. & Gün¬tert, P. PSEUDYANA for NMR structure calculation of paramagnetic metalloproteins us¬ing torsion angle molecular dynamics. J. Biomol. NMR 12, 553–557 (1998)
  • Koradi, R., Billeter, M., Engeli, M., Güntert, P. & Wüthrich, K. Automated peak pick¬ing and peak integration in macromolecular NMR spectra using AUTOPSY. J. Magn. Reson. 135, 288–297 (1998)
  • Güntert, P. Structure calculation of biological macromolecules from NMR data. Q. Rev. Biophys. 31, 145–237 (1998)
  • Pellecchia, M., Güntert, P., Glockshuber, R. & Wüthrich, K. The NMR solution struc¬ture of the periplasmic chaperone FimC. Nature Struct. Biol. 5, 885–890 (1998)
  • Pellecchia, M., Güntert, P., Glockshuber, R. & Wüthrich, K. Sequence-specific 1H, 15N and 13C assignments of the periplasmic chaperone FimC from Escherichia coli. J. Biomol. NMR 11, 229–230 (1998)

1997

  • Billeter, M., Güntert, P., Luginbühl, P., Koradi, R. & Wüthrich, K. Biological macro¬molecules studied by molecular dynamics simulations. Crosscuts 6, 19–21 (1997)
  • Mumenthaler, C., Güntert, P., Braun, W. & Wüthrich, K. Automated combined assign¬ment of NOESY spectra and three-dimensional protein structure determination. J. Biomol. NMR 10, 351–362 (1997)
  • Güntert, P., Mumenthaler, C. & Wüthrich, K. Torsion angle dynamics for NMR structure calculation with the new program DYANA. J. Mol. Biol. 273, 283–298 (1997)
  • Ottiger, M., Zerbe, O., Güntert, P. & Wüthrich, K. The NMR solution conformation of unligated human Cyclophilin A. J. Mol. Biol. 272, 64–81 (1997)
  • Güntert, P. Calculating protein structures from NMR data. Meth. Mol. Biol. 60, 157–194 (1997)
  • Bartels, C., Güntert, P., Billeter, M. & Wüthrich, K. GARANT—A general algorithm for resonance assignment of multidimensional nuclear magnetic resonance spectra. J. Comp. Chem. 18, 139–149 (1997)

1996

  • Wüthrich, K., Billeter, M., Güntert, P., Luginbühl, P., Riek, R. & Wider, G. NMR stud¬ies of hydration of biological macromolecules. Faraday Discuss. 103, 245–253 (1996)
  • Arbenz, P., Billeter, M., Güntert, P., Luginbühl, P., Taufer, M. & von Matt, U. Molec¬ular dynamics simulations on Cray clusters using the SCIDDLE-PVM environment. Lecture Notes in Computer Science 1156, 142–149 (1996)
  • Luginbühl, P., Güntert, P., Billeter, M. & Wüthrich K. The new program OPAL for mo¬lecular dynamics simulations and energy refinements of biological macromolecules. J. Biomol. NMR 8, 136–146 (1996)
  • Antuch, W., Güntert, P. & Wüthrich, K. Ancestral -crystallin precursor structure in a yeast killer toxin. Nature Struct. Biol. 3, 662–665 (1996)
  • Billeter, M., Güntert, P., Luginbühl, P. & Wüthrich, K. Hydration and DNA recogni¬tion by homeodomains. Cell 85, 1057–1065 (1996)
  • Bartels, C., Billeter, M., Güntert, P. & Wüthrich, K. Automated sequence-specific NMR assignment of homologous proteins using the program GARANT. J. Biomol. NMR 7, 207–213 (1996)
  • Berndt, K. D., Güntert, P. & Wüthrich, K. Conformational sampling by NMR solution structures calculated with the program DIANA evaluated by comparison with long-time molec¬ular dynamics calculations in explicit water. Proteins 24, 304–313 (1996)

1995

  • Bartels, C., Güntert, P. & Wüthrich, K. IFLAT—A new automatic baseline-correction method for multidimensional NMR spectra with strong solvent signals. J. Magn. Reson. A 117, 330–333 (1995)
  • Brunne, R. M., Berndt, K. D., Güntert, P., Wüthrich, K. & van Gunsteren, W. F. Struc¬ture and internal dynamics of the bovine pancreatic trypsin inhibitor in aqueous solution from long-time molecular dynamics simulations. Proteins 23, 49–62 (1995)
  • Bartels, C., Xia, T., Billeter, M., Güntert, P. & Wüthrich, K. The program XEASY for computer-supported NMR spectral analysis of biological macromolecules. J. Biomol. NMR 6, 1–10 (1995)

1994

  • Güntert, P. Computer–supported protein structure determination by NMR. In Statisti¬cal mechanics, protein structure and protein–substrate interactions (Ed. S. Doniach), Plenum Press, New York, pp. 197–207 (1994)
  • Antuch, W., Güntert, P., Billeter, M., Hawthorne, T., Grossenbacher, H. & Wüthrich, K. NMR solution structure of the recombinant tick anticoagulant protein (rTAP), a factor Xa inhibitor from the tick Ornithodoros moubata. FEBS Lett. 352, 251–257 (1994)


1993

  • Wüthrich, K., Güntert, P. & Berndt, K. D. Computer–supported NMR structure deter¬mination of proteins in solution illustrated with studies of protein proteinase inhibitors. In Pro¬ceedings of the workshop on innovations on proteases and their inhibitors: fundamental and applied aspects (Ed. F. X. Avilés), de Gruyter, Berlin (1993)
  • Berndt, K. D., Güntert, P. & Wüthrich, K. The NMR solution structure of dendrotoxin K from the venom of Dendroaspis polylepis polylepis. J. Mol. Biol. 234, 735–750 (1993)
  • Güntert, P., Berndt, K. D. & Wüthrich, K. The program ASNO for computer-supported collection of NOE upper distance constraints as input for protein structure determination. J. Biomol. NMR 3, 601–606 (1993)
  • Güntert, P., Schaefer, N., Otting, G. & Wüthrich K. POMA, a complete Mathematica implementation of the NMR product operator formalism. J. Magn. Reson. A 101, 103–105 (1993)
  • Szyperski, T., Luginbühl, P., Otting, G., Güntert, P. & Wüthrich, K. Protein dynamics studied by rotating frame 15N spin relaxation times. J. Biomol. NMR 3, 151–164 (1993)

1992

  • Szyperski, T., Güntert, P., Stone, S. R. & Wüthrich, K. NMR solution structure of hiru¬din(1–51) and comparison with corresponding three-dimensional structures determined using the complete 65-residue hirudin polypeptide chain. J. Mol. Biol. 228, 1193–1205 (1992)
  • Szyperski, T., Güntert, P., Stone, S. R., Tulinsky, A., Bode, W., Huber, R. & Wüthrich, K. Impact of protein-protein contacts on the conformation of thrombin-bound hirudin studied by comparison with the NMR solution structure of hirudin(1–51). J. Mol. Biol. 228, 1206–1211 (1992)
  • Güntert, P., Dötsch, V., Wider, G. & Wüthrich K. Processing of multi-dimensional NMR data with the new software PROSA. J. Biomol. NMR 2, 619–629 (1992)
  • Berndt, K. D., Güntert, P., Orbons, L. P. M. & Wüthrich, K. Determination of a high-quality NMR solution structure of the bovine pancreatic trypsin inhibitor (BPTI) and compari¬son with three crystal structures. J. Mol. Biol. 227, 757–775 (1992)
  • Szyperski, T., Güntert, P., Otting, G. & Wüthrich, K. Determination of scalar coupling constants by inverse Fourier transformation of in-phase multiplets. J. Magn. Reson. 99, 552– 560 (1992)
  • Güntert, P. & Wüthrich, K. FLATT—A new procedure for high-quality baseline cor¬rection of two- and higher-dimensional NMR spectra. J. Magn. Reson. 96, 403–407 (1992)

1991

  • Mertz, J. E., Güntert, P., Wüthrich, K. & Braun, W. Complete relaxation matrix refine¬ment of NMR structures of proteins using analytically calculated dihedral angle derivatives of NOE intensities. J. Biomol. NMR 1, 257–269 (1991)
  • Eccles, C., Güntert, P., Billeter, M. & Wüthrich, K. Efficient analysis of protein 2D NMR spectra using the software package EASY. J. Biomol. NMR 1, 111–130 (1991)
  • Güntert, P. & Wüthrich, K. Improved efficiency of protein structure calculations from NMR data using the program DIANA with redundant dihedral angle constraints. J. Biomol. NMR 1, 447–456 (1991)
  • Güntert, P., Braun, W. & Wüthrich, K. Efficient computation of three-dimensional pro¬tein structures in solution from nuclear magnetic resonance data using the program DIANA and the supporting programs CALIBA, HABAS and GLOMSA. J. Mol. Biol. 217, 517–530 (1991)
  • Güntert, P., Qian, Y. Q., Otting, G., Müller, M., Gehring, W. J. & Wüthrich K. Structure determination of the Antp(C39S) homeodomain from nuclear magnetic resonance data in so¬lution using a novel strategy for the structure calculation with the programs DIANA, CALIBA, HABAS and GLOMSA. J. Mol. Biol. 217, 531–540 (1991)

1989

  • Güntert, P., Braun, W., Billeter, M. & Wüthrich, K. Automated stereospecific 1H NMR assignments and their impact on the precision of protein structure determinations in solution. J. Amer. Chem. Soc. 111, 3997–4004 (1989)
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