Tutorials: Difference between revisions
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== CYANA Tutorials == | == CYANA Tutorials == | ||
* [[Defining non-standard residues]] | * [[Defining non-standard residues]] | ||
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** [[Calculate RMSD values and mean structures]] | ** [[Calculate RMSD values and mean structures]] | ||
** [[Angle restraints from the program TALOS]] | ** [[Angle restraints from the program TALOS]] | ||
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== Courses == | |||
=== EMBO Practical Course: Structure, dynamics and function of biomacromolecules by NMR 2019 === | |||
Garching bei München, 26 July - 2 August 2019 ([http://embo2019.bnmrz.org/ course homepage]) | |||
* [[Structure calculation and automated NOESY assignment with CYANA (EMBO 2019)|Structure calculation and automated NOESY assignment with CYANA]] | |||
* [[Automated resonance assignment with FLYA (EMBO 2019)|Automated resonance assignment with FLYA]] | |||
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* [[Automated resonance assignment with FLYA (Brazil 2018)|Complex Structure calculation]] | |||
* [[Automated resonance assignment with FLYA (EMBO 2017)|Automated resonance assignment with FLYA]] (EMBO Practical Course NMR in Basel, 5-12 August 2017)--> | |||
<!--* [[Automated resonance assignment with FLYA (EMBO 2015)|Automated resonance assignment with FLYA]] (EMBO Practical Course NMR in Munich, 31 July - 7 August 2015) | |||
* [[Automated resonance assignment with FLYA (Gothenburg 2014)|Automated resonance assignment with FLYA]] (Biomolecular NMR course at the Swedish NMR Centre, Gothenburg, 15 October 2014) | |||
* [[Automated resonance assignment with FLYA (EMBO 2013)|Automated resonance assignment with FLYA]] (EMBO Practical Course NMR in Basel, 20–27 July 2013) | |||
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* [[NMRView peak list file]] (.xpk) | * [[NMRView peak list file]] (.xpk) | ||
</div> | </div> | ||
Revision as of 16:41, 28 July 2019
Downloads
- Latest demo version of CYANA 3.98.12beta for Linux and Mac OSX (20.07.2019)
The demo version has the full functionality of the program for the protein sequences that are used in the example calculations.
INCLAN Tutorials
CYANA Tutorials
CYANA example calculations
- Basic structure calculation starting from given restraints
- Structure calculation using manually assigned NOESY peak lists
- Structure calculation with automated NOESY assignment
- Homodimer structure calculation with automated NOESY assignment
Courses
EMBO Practical Course: Structure, dynamics and function of biomacromolecules by NMR 2019
Garching bei München, 26 July - 2 August 2019 (course homepage)
- Structure calculation and automated NOESY assignment with CYANA
- Automated resonance assignment with FLYA
Input file formats
- Residue library file (.lib)
- Sequence file (.seq)
- Distance restraint file (.upl, .lol)
- Torsion angle restraint file (.aco)
- Residual dipolar coupling restraint file (.rdc)
- Pseudocontact shift restraint file (.pcs)
- DG Cartesian coordinate file (.cor)
- PDB coordinate file (.pdb)
- Torsion angle file (.ang)
- XEASY chemical shift list file (.prot)
- BMRB chemical shift list file (.bmrb)
- XEASY peak list file (.peaks)
- NMRView peak list file (.xpk)