Software from P. Güntert: Difference between revisions
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== Available software == | == Available software == | ||
* [[ | * [[ATNOS]]: Automated NOESY peak picking | ||
* AUTOPSY: Automated peak picking in NMR spectroscopy | * [[AUTOPSY]]: Automated peak picking in NMR spectroscopy | ||
* CANDID: Combined automated NOE assignment and structure determination module | * [[CANDID]]: Combined automated NOE assignment and structure determination module | ||
* COCO: Compare covalent geometry | * [[COCO]]: Compare covalent geometry | ||
* COFIMA: Coordinate and constraint file manipulation | * [[COFIMA]]: Coordinate and constraint file manipulation | ||
* CYANA: Combined assignment and dynamics algorithm for NMR applications | * [[CYANA]]: Combined assignment and dynamics algorithm for NMR applications | ||
* GARANT: General algorithm for resonance assignment | * [[GARANT]]: General algorithm for resonance assignment | ||
* INFIT: Coupling constants from inverse Fourier transformation of in-phase multiplets | * [[INFIT]]: Coupling constants from inverse Fourier transformation of in-phase multiplets | ||
* MAPPER: Sequence-specific NMR assignment of proteins by global sequence mapping | * [[MAPPER]]: Sequence-specific NMR assignment of proteins by global sequence mapping | ||
* POMA: Product operator formalism in Mathematica | * [[POMA]]: Product operator formalism in Mathematica | ||
* PROSA: Processing algorithms | * [[PROSA]]: Processing algorithms | ||
* XEASY: X-windows version of ETH Automated Spectroscopy | * XEASY: X-windows version of ETH Automated Spectroscopy | ||
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Not yet available, not separately available, or outdated software. | Not yet available, not separately available, or outdated software. | ||
* ASNO: Semi-automated assignment of NOEs | * [[ASNO]]: Semi-automated assignment of NOEs | ||
* CALIBA: Calibration of NOE distance constraints | * [[CALIBA]]: Calibration of NOE distance constraints | ||
* DIANA: Distance geometry algorithm for NMR applications | * [[DIANA]]: Distance geometry algorithm for NMR applications | ||
* DYANA: Dynamics algorithm for NMR applications | * [[DYANA]]: Dynamics algorithm for NMR applications | ||
* EASY: ETH automated spectroscopy | * [[EASY]]: ETH automated spectroscopy | ||
* FLYA: Fully automated structure determination of proteins in solution | * [[FLYA]]: Fully automated structure determination of proteins in solution | ||
* FOUND: Grid search and stereospecific assignment algorithm | * [[FOUND]]: Grid search and stereospecific assignment algorithm | ||
* GLOMSA: Global method for stereo-specific assignments | * [[GLOMSA]]: Global method for stereo-specific assignments | ||
* HABAS: Grid search and stereospecific assignment algorithm | * [[HABAS]]: Grid search and stereospecific assignment algorithm | ||
* INCLAN: Interactive command language | * [[INCLAN]]: Interactive command language | ||
* OPAL: Energy refinement and MD simulation algorithm for vector suporcomputers | * [[OPAL]]: Energy refinement and MD simulation algorithm for vector suporcomputers | ||
* OPALp: Energy refinement and molecular dynamics simulation algorithm | * [[OPALp]]: Energy refinement and molecular dynamics simulation algorithm | ||
Revision as of 11:21, 8 December 2008
Software developed by the group and earlier by P. Güntert and collaborators at ETH Zürich.
Available software
- ATNOS: Automated NOESY peak picking
- AUTOPSY: Automated peak picking in NMR spectroscopy
- CANDID: Combined automated NOE assignment and structure determination module
- COCO: Compare covalent geometry
- COFIMA: Coordinate and constraint file manipulation
- CYANA: Combined assignment and dynamics algorithm for NMR applications
- GARANT: General algorithm for resonance assignment
- INFIT: Coupling constants from inverse Fourier transformation of in-phase multiplets
- MAPPER: Sequence-specific NMR assignment of proteins by global sequence mapping
- POMA: Product operator formalism in Mathematica
- PROSA: Processing algorithms
- XEASY: X-windows version of ETH Automated Spectroscopy
Other software
Not yet available, not separately available, or outdated software.
- ASNO: Semi-automated assignment of NOEs
- CALIBA: Calibration of NOE distance constraints
- DIANA: Distance geometry algorithm for NMR applications
- DYANA: Dynamics algorithm for NMR applications
- EASY: ETH automated spectroscopy
- FLYA: Fully automated structure determination of proteins in solution
- FOUND: Grid search and stereospecific assignment algorithm
- GLOMSA: Global method for stereo-specific assignments
- HABAS: Grid search and stereospecific assignment algorithm
- INCLAN: Interactive command language
- OPAL: Energy refinement and MD simulation algorithm for vector suporcomputers
- OPALp: Energy refinement and molecular dynamics simulation algorithm