CYANA script: cyanatable: Difference between revisions

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== Synopsis ==
== Synopsis ==


'''cyanatable [''option''] [''prefix''] [''logfile'']'''
Produces a summary table of a combined automated NOESY assignment and structure calculation run executed with the [[CYANA Macro: noeassign|'''noeassign''']] macro. The '''cyanatable''' command can be used for complete or partially completed runs. Statistics on the NOESY peak assignments, the upper distance bounds, and the structure calculation are extracted from output files produced by [[CYANA Macro: noeassign|'''noeassign''']] and arranged in a table with one column for each cycle of combined automated NOESY assignment and structure calculation. The standard output from the [[CYANA Macro: noeassign|'''noeassign''']] run must have been collected in a log file called either '''AUTO.out''', '''CALC.out''', '''CANDID.out''', '''''prefix''.out''', or ''logfile''.
 
If present, the given prefix is prepended to all other input file names. For instance, if the prefix is run1, then the cyanatable script will look for files named run1cycle1.noa, run1cycle1.ovw etc. instead of the files with default file names cycle1.noa, cycle1.ovw etc.
The '''cyanatable''' shell script produces a summary table of a combined
automated NOESY assignment and structure calculation run executed with
the '''noeassign''' macro. Statistics on the NOESY peak assignments, the
upper distance bounds, and the structure calculation are extracted from
output files produced by '''noeassign''' and arranged in a table with one
column for each cycle of combined automated NOESY assignment and
structure calculation. The standard output from the '''noeassign''' run must
have been collected in a log file called AUTO.out, CANDID.out, CALC.out,
''prefix''.out, or ''logfile''.  
 
If present, the given ''prefix'' is prepended to all other input file
names. If, for instance, ''prefix'' is '''run1''', then the '''cyanatable'''
script will look for files named '''run1cycle1.noa''', '''run1cycle1.ovw''' etc.
instead of the files with default file names '''cycle1.noa''', '''cycle1.ovw'''
etc.
 
This command can be invoked from the Unix shell or from within CYANA.
The command syntax follows Unix (not INCLAN) conventions.
 
Options:
Options:
-h help
-l long, more detailed output
-p report percentages instead of absolute values


;-h: help
;-l: long, more detailed output
;-p: report percentages instead of absolute values


== See also ==
== See also ==


* [[CYANA Macro: noeassign|noeassign]]
* [[CYANA Macro: noeassign|noeassign]]

Revision as of 12:33, 12 August 2009

Synopsis

Produces a summary table of a combined automated NOESY assignment and structure calculation run executed with the noeassign macro. The cyanatable command can be used for complete or partially completed runs. Statistics on the NOESY peak assignments, the upper distance bounds, and the structure calculation are extracted from output files produced by noeassign and arranged in a table with one column for each cycle of combined automated NOESY assignment and structure calculation. The standard output from the noeassign run must have been collected in a log file called either AUTO.out, CALC.out, CANDID.out, prefix.out, or logfile. If present, the given prefix is prepended to all other input file names. For instance, if the prefix is run1, then the cyanatable script will look for files named run1cycle1.noa, run1cycle1.ovw etc. instead of the files with default file names cycle1.noa, cycle1.ovw etc. Options: -h help -l long, more detailed output -p report percentages instead of absolute values


See also

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