CYANA Command: distances vdw: Difference between revisions

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== Parameters ==
== Parameters ==


; first=''string''                 (required)
; first=''[[atom selection]]'': (required)
; second=''string''               (required)
; second=''[[atom selection]]'': (required)
; limit=''real'': (default: -1.0)
; limit=''real'': (default: -1.0)
; increment=''real'': (default: 0.0)
; increment=''real'': (default: 0.0)
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== Description ==
== Description ==


This command sets or modifies the lower distance limits for the
Sets or modifies the lower distance limits for the steric repulsion between atoms matched by the ''first'' and ''second'' selections if their residue index difference is within the ''levels'' range. The lower distance bound is set to the given ''limit'', if present, or increased from its current value by the given ''increment'' otherwise.
steric repulsion between atoms matched by the selections '''first'''
and '''second''' if their residue index difference is within the range
given by the parameter '''levels'''. The lower distance bound is set to
the value of the parameter '''limit''', if present, or increased by the
amount specified by the parameter '''increment'''.

Latest revision as of 13:49, 13 August 2009

Parameters

first=atom selection
(required)
second=atom selection
(required)
limit=real
(default: -1.0)
increment=real
(default: 0.0)
levels=integer range
(default: -99999..99999)

Description

Sets or modifies the lower distance limits for the steric repulsion between atoms matched by the first and second selections if their residue index difference is within the levels range. The lower distance bound is set to the given limit, if present, or increased from its current value by the given increment otherwise.

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