CYANA script: cyanatable: Difference between revisions
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== Synopsis == | == Synopsis == | ||
== Description == | == Description == | ||
Produces a summary table of a combined automated NOESY assignment and structure calculation run executed with the [[CYANA Macro: noeassign|'''noeassign''']] macro. The '''cyanatable''' command can be used for complete or partially completed runs. Statistics on the NOESY peak assignments, the upper distance bounds, and the structure calculation are extracted from output files produced by [[CYANA Macro: noeassign|'''noeassign''']] and arranged in a table with one column for each cycle of combined automated NOESY assignment and structure calculation. The standard output from the [[CYANA Macro: noeassign|'''noeassign''']] run must have been collected in a log file called either '''AUTO.out''', '''CALC.out''', '''CANDID.out''', ''''' | Produces a summary table of a combined automated NOESY assignment and structure calculation run executed with the [[CYANA Macro: noeassign|'''noeassign''']] macro. The '''cyanatable''' command can be used for complete or partially completed runs. Statistics on the NOESY peak assignments, the upper distance bounds, and the structure calculation are extracted from output files produced by [[CYANA Macro: noeassign|'''noeassign''']] and arranged in a table with one column for each cycle of combined automated NOESY assignment and structure calculation. The standard output from the [[CYANA Macro: noeassign|'''noeassign''']] run must have been collected in a log file called either '''AUTO.out''', '''CALC.out''', '''CANDID.out''', ''prefix'''''.out''', or ''logfile''. | ||
If present, the given prefix is prepended to all other input file names. For instance, if the prefix is run1, then the cyanatable script will look for files named run1cycle1.noa, run1cycle1.ovw etc. instead of the files with default file names cycle1.noa, cycle1.ovw etc. | If present, the given ''prefix'' is prepended to all other input file names. For instance, if the prefix is '''run1''', then the '''cyanatable''' script will look for files named '''run1cycle1.noa''', '''run1cycle1.ovw''' etc. instead of the files with default file names '''cycle1.noa''',''' cycle1.ovw''' etc. | ||
Options: | Options: | ||
-h help | :;-h: help | ||
-l long, more detailed output | :;-l: long, more detailed output | ||
-p report percentages instead of absolute values | :;-p: report percentages instead of absolute values | ||
== See also == | == See also == | ||
* [[CYANA Macro: noeassign|noeassign]] | * [[CYANA Macro: noeassign|noeassign]] | ||
Latest revision as of 14:19, 12 August 2009
Synopsis
Description
Produces a summary table of a combined automated NOESY assignment and structure calculation run executed with the noeassign macro. The cyanatable command can be used for complete or partially completed runs. Statistics on the NOESY peak assignments, the upper distance bounds, and the structure calculation are extracted from output files produced by noeassign and arranged in a table with one column for each cycle of combined automated NOESY assignment and structure calculation. The standard output from the noeassign run must have been collected in a log file called either AUTO.out, CALC.out, CANDID.out, prefix.out, or logfile. If present, the given prefix is prepended to all other input file names. For instance, if the prefix is run1, then the cyanatable script will look for files named run1cycle1.noa, run1cycle1.ovw etc. instead of the files with default file names cycle1.noa, cycle1.ovw etc. Options:
- -h
- help
- -l
- long, more detailed output
- -p
- report percentages instead of absolute values