CYANA setup for the EMBO Practical Course on NMR in Garching (2019): Difference between revisions
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# Log in to the Windows computer. | # Log in to the Windows computer. | ||
# Start 'nx' to log in "your" Linux server. | # Start 'nx' to log in to "your" Linux server. | ||
# Change the keyboard layout to German (System -> Preferences -> Hardware -> Keyboard -> Layouts; add German, remove English) | # Change the keyboard layout to German (System -> Preferences -> Hardware -> Keyboard -> Layouts; add German, remove English) | ||
# From "your" Linux server, log in to one of the three Linux clusters, cluster01, cluster02, or cluster03. | # From "your" Linux server, log in to one of the three Linux clusters, cluster01, cluster02, or cluster03. | ||
| Line 11: | Line 11: | ||
Linux commands for steps 4-7 (you may copy them into a terminal): | Linux commands for steps 4-7 (you may copy them into a terminal): | ||
ssh -Y cluster02.nmr.ch.tum.de # this command has to repeated in each new terminal window | ssh -Y cluster02.nmr.ch.tum.de # or cluster01, cluster02; this command has to repeated in each new terminal window | ||
cd ~ | cd ~ | ||
mkdir CYANA | mkdir CYANA | ||
Revision as of 16:49, 29 July 2019
Please follow these steps:
- Log in to the Windows computer.
- Start 'nx' to log in to "your" Linux server.
- Change the keyboard layout to German (System -> Preferences -> Hardware -> Keyboard -> Layouts; add German, remove English)
- From "your" Linux server, log in to one of the three Linux clusters, cluster01, cluster02, or cluster03.
- Go to your home directory.
- Make a new directory 'CYANA' for the practical.
- Copy the input data for the practical.
Linux commands for steps 4-7 (you may copy them into a terminal):
ssh -Y cluster02.nmr.ch.tum.de # or cluster01, cluster02; this command has to repeated in each new terminal window cd ~ mkdir CYANA cd CYANA cp -a /ms/data/prog/cyana/current/demo* .
There will be four demo directories with example data for the practical:
- demo: Input data for the standard demos
- demoquick: Input for the same demos, but modified for quick calculation (at some expense of quality)
- demo-results: Input data and results for the standard demos
- demoquick-results: the same for the "quick" demos
The program CYANA can be started by typing its name, 'cyana', and quit by typing 'quit' or 'q':
cd demoquick/flya
cyana
___________________________________________________________________
CYANA 3.98.12 (intel)
Copyright (c) 2002-18 Peter Guentert. All rights reserved.
___________________________________________________________________
Time-limited license valid until 2019-12-31.
Library file "/home/guentert/src/cyana-3.98.12/lib/cyana.lib" read, 41 residue types.
Sequence file "demo.seq" read, 114 residues.
cyana> q
If all worked, you are ready to go!
If you want to return to your practical later, using your own Linux or Mac OS X computer, you can download the demo version of CYANA from here.
Hint: More information on the CYANA commands etc. is in the CYANA 3.0 Reference Manual.