CYANA setup for the EMBO Practical Course on NMR in Garching (2019)

Please follow these steps:

1. Log in to the Windows computer.
2. Start 'nx' to log in to "your" Linux server.
3. Change the keyboard layout to German (System -> Preferences -> Hardware -> Keyboard -> Layouts; add German, remove English)
4. From "your" Linux server, log in to one of the three Linux clusters, cluster01, cluster02, or cluster03.
5. Go to your home directory.
6. Make a new directory 'CYANA' for the practical.
7. Copy the input data for the practical.

Linux commands for steps 4-7 (you may copy them into a terminal):

ssh -Y cluster02.nmr.ch.tum.de   # or cluster01, cluster02; this command has to repeated in each new terminal window
cd ~
mkdir CYANA
cd CYANA
cp -a /ms/data/prog/cyana/current/demo* .   # don't forget the dot

There will be four demo directories with example data for the practical:

• demo: Input data for the standard demos
• demoquick: Input for the same demos, but modified for quick calculation (at some expense of quality)
• demo-results: Input data and results for the standard demos
• demoquick-results: the same for the "quick" demos

The program CYANA can be started by typing its name, 'cyana', and quit by typing 'quit' or 'q':

cd demoquick/basic
cyana
___________________________________________________________________

CYANA 3.98.12 (intel)

Copyright (c) 2002-18 Peter Guentert. All rights reserved.
___________________________________________________________________

    Time-limited license valid until 2019-12-31.
    Library file "/home/guentert/src/cyana-3.98.12/lib/cyana.lib" read, 41 residue types.
    Sequence file "demo.seq" read, 114 residues.
cyana> q

If all worked, you are ready to go!

If you want to return to your practical later, using your own Linux or Mac OS X computer, you can download the demo version of CYANA from here.

Hint: More information on the CYANA commands etc. is in the CYANA 3.0 Reference Manual.