CYANA setup for the EMBO Practical Course on NMR in Garching (2019)

Please follow the following steps:

1. Log in to the Windows computer.
2. Start 'nx' to log in "your" Linux server.
3. From "your" Linux server, log in to one of the three Linux clusters, cluster01, cluster02, or cluster03.
4. Go to your home directory.
5. Make a new directory 'CYANA' for the practical.
6. Copy the input data for the practical.

Linux commands for steps 3-6 (you may copy them into a terminal):

ssh -Y cluster02.nmr.ch.tum.de   # this command has to repeated in each new terminal
cd ~
mkdir CYANA
cd CYANA
cp -a /ms/data/prog/cyana/current/demo* .

There will be four demo directories with example data for the practical:

• demo: Input data for the standard demos
• demoquick: Input for the same demos, but modified for quick calculation (at some expense of quality)
• demo-results: Input data and results for the standard demos
• demoquick-results: the same for the "quick" demos

The program CYANA can be started by typing its name, 'cyana', and quit by typing 'quit' or 'q':

cd demoquick/flya
cyana
___________________________________________________________________

CYANA 3.98.12 (intel)

Copyright (c) 2002-18 Peter Guentert. All rights reserved.
___________________________________________________________________

    Time-limited license valid until 2019-12-31.
    Library file "/home/guentert/src/cyana-3.98.12/lib/cyana.lib" read, 41 residue types.
    Sequence file "demo.seq" read, 114 residues.
cyana> q

If all worked, you are ready to go!

If you want to return to your practical later, using your own Linux or Mac OS X computer, you can download the demo version of CYANA from here.

Hint: More information on the CYANA commands etc. is in the CYANA 3.0 Reference Manual.