Tutorials: Difference between revisions
Jump to navigation
Jump to search
No edit summary Tag: Manual revert |
No edit summary |
||
| Line 1: | Line 1: | ||
== Downloads == | == Downloads == | ||
* Latest [[Media:cyana-3.98.15bin- | * Latest [[Media:cyana-3.98.15bin-250806Demo.tgz|demo version of CYANA 3.98.15]] for Linux and MacOS (06.08.2025)<br>The demo version has the full functionality of the program for the protein sequences that are used in the example calculations. | ||
* On certain Mac systems, you must execute the command 'xattr -r -d com.apple.quarantine cyana-3.98.15' after unpacking CYANA to allow execution of the programs. | * On certain Mac systems, you must execute the command 'xattr -r -d com.apple.quarantine cyana-3.98.15' after unpacking CYANA to allow execution of the programs. | ||
* [http://www.cyana.org/demo-results.tgz Results of all CYANA 3.98.13 demo calculations] (93 MB). | * [http://www.cyana.org/demo-results.tgz Results of all CYANA 3.98.13 demo calculations] (93 MB). | ||
| Line 8: | Line 8: | ||
* [[Writing and using INCLAN macros]] | * [[Writing and using INCLAN macros]] | ||
* [[Using INCLAN variables]] | * [[Using INCLAN variables]]https://cyana.org/w/index.php?title=Tutorials&action=edit | ||
* [[Using INCLAN control statements]] | * [[Using INCLAN control statements]] | ||
Latest revision as of 19:07, 6 August 2025
Downloads
- Latest demo version of CYANA 3.98.15 for Linux and MacOS (06.08.2025)
The demo version has the full functionality of the program for the protein sequences that are used in the example calculations. - On certain Mac systems, you must execute the command 'xattr -r -d com.apple.quarantine cyana-3.98.15' after unpacking CYANA to allow execution of the programs.
- Results of all CYANA 3.98.13 demo calculations (93 MB).
INCLAN Tutorials
- Writing and using INCLAN macros
- Using INCLAN variableshttps://cyana.org/w/index.php?title=Tutorials&action=edit
- Using INCLAN control statements
CYANA Tutorials
CYANA example calculations
- Basic structure calculation starting from given restraints
- Structure calculation using manually assigned NOESY peak lists
- Structure calculation with automated NOESY assignment
- Homodimer structure calculation with automated NOESY assignment
- ENORA and multi-state structure calculations
- Identification of key NOEs
- Determination of the protein state populations
- Determination of the protein number of states
- Peaklist preparation for eNOE pipeline
Courses
EMBO Practical Course: Structure, dynamics and function of biological macromolecules by NMR
Grenoble, 30 August – 6 September 2024 (course homepage)
Input file formats
- Residue library file (.lib)
- Sequence file (.seq)
- Distance restraint file (.upl, .lol)
- Torsion angle restraint file (.aco)
- Residual dipolar coupling restraint file (.rdc)
- Pseudocontact shift restraint file (.pcs)
- DG Cartesian coordinate file (.cor)
- PDB coordinate file (.pdb)
- Torsion angle file (.ang)
- XEASY chemical shift list file (.prot)
- BMRB chemical shift list file (.bmrb)
- XEASY peak list file (.peaks)
- NMRView peak list file (.xpk)