CYANA Commands

CYANA Commands

A

• angles count
• angles delete
• angles flip
• angles ramachandran
• angles select
• angles set
• angles split
• angstat clear
• angstat list
• angstat make
• anneal (macro)
• assign
• atoms attach
• atoms calibrate
• atoms count
• atoms glomsa
• atoms list
• atoms observable
• atoms select
• atoms set
• atoms shifts
• atoms stereo
• atoms swap

C

• calc_all (macro)
• caliba (macro)
• calibrate
• calibration (macro)
• cashiftaco (macro)
• cashiftplot (macro)
• cisprocheck (macro)
• coco (macro)
• couplings count
• couplings delete
• couplings make
• couplings select
• couplings set
• cyscheck (macro)

D

• dcostat (macro)
• dcotab (macro)
• deposit (macro)
• dinucleotide (macro)
• distances calculate
• distances check
• distances combine
• distances compare
• distances correct
• distances count
• distances delete
• distances expand
• distances falsify
• distances hbond
• distances make
• distances modify
• distances multiple
• distances select
• distances set
• distances short
• distances split
• distances stat
• distances stereoexpand
• distances unique
• distances vdw

F

• flip (macro)
• forall (macro)

G

• garant (macro)
• gradient
• graf (macro)
• grid aco
• grid correlate
• grid fragment
• grid memory
• gridplot (macro)
• grid search
• grid swap

H

• habas (macro)
• hbond (macro)

I

• init (macro)
• initsafe (macro)

K

• karplus (macro)
• kringle (macro)

L

• library check
• library mirror
• library new
• library remove
• library rename
• library replace
• longrangeplot (macro)
• loop (macro)

M

• makeaco (macro)
• md
• minimize
• molecules define
• molecules identity
• molecules symdist

N

• noeassign (macro)

O

• onelettercode (macro)
• opalprefine (macro)
• overlay (macro)
• overview (macro)

P

• pcs axial
• pcs count
• pcs delete
• pcs list
• pcs make
• pcs rhombic
• pcs select
• pcs set
• peakcheck (macro)
• peaks backcal
• peaks calibrate
• peaks count
• peaks create
• peaks delete
• peaks deviations
• peaks distance
• peaks filter
• peaks fit
• peaks protonize
• peaks select
• peaks set
• peaks simplecal
• peaks split
• peaks unassign
• peaks unique
• prolinebond (macro)

R

• ramaaco (macro)
• ramaplot (macro)
• random_all (macro)
• randomize
• rdc count
• rdc delete
• rdc distance
• rdcdistances (macro)
• rdc fittensor
• rdc list
• rdc make
• rdc select
• rdc set
• rdc tensor
• read aco
• read_all (macro)
• read ang
• read bmrb
• read cco
• read cor
• readdata (macro)
• read lib
• read lol
• read nmrview
• read pcs
• read pdb
• read peaks
• read prot
• read rdc
• read upl
• read xpk
• read xplor
• redac (macro)
• renumber (macro)
• rmsd (macro)
• rotameraco (macro)

S

• savestereo (macro)
• seqplot (macro)
• shifts adapt
• shifts assign
• shifts check
• shifts collapse
• shifts consolidate
• shifts converge
• shifts d2o
• shifts incomplete
• shifts initialize
• shifts missing
• shifts randomcoil
• shifts renumber
• shifts unusual
• ssbond (macro)
• stereoassign (macro)
• structcalc (macro)
• structures clear
• structures copy
• structures hbonds
• structures insert
• structures list
• structures mean
• structures overlay
• structures secondary
• structures select
• structures sort
• structures swap
• structures violate
• sugarbond (macro)
• sugarring (macro)
• syscheck (macro)

T

• talosaco (macro)
• taloslist (macro)
• threelettercode (macro)
• translate (macro)

V

• vtfmin (macro)

W

• watsoncrick (macro)
• write aco
• write_all (macro)
• write ang
• write assign
• write bmrb
• write cco
• write cor
• write lib
• write lol
• write pcs
• write pdb
• write peaks
• write prot
• write rdc
• write seq
• write sparky
• write upl
• write xpk