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  1. AUTOPSY
  2. Aco type
  3. Alias
  4. Anam
  5. Anamlib
  6. Angle
  7. Anglelong
  8. Angles delete
  9. Angles select
  10. Angles set
  11. Anneal
  12. Ask
  13. Atom
  14. Atomlong
  15. Atoms attach
  16. Atoms list
  17. Atoms select
  18. Atoms set
  19. Atoms stereo
  20. Atoms swap
  21. Automated NMR protein structure calculation with CYANA
  22. BMRB chemical shift list file
  23. Bondangle
  24. Break
  25. Break, exit, quit, return
  26. CANDID
  27. CYANA Command: angles fix
  28. CYANA Command: angles free
  29. CYANA Command: anneal
  30. CYANA Command: atoms attach
  31. CYANA Command: atoms shifts
  32. CYANA Command: atoms values
  33. CYANA Command: distances expand
  34. CYANA Command: distances make
  35. CYANA Command: distances stereoexpand
  36. CYANA Command: gradient
  37. CYANA Command: grid swap
  38. CYANA Command: library mirror
  39. CYANA Command: library new
  40. CYANA Command: library remove
  41. CYANA Command: library rename
  42. CYANA Command: molecules define
  43. CYANA Command: pcs axial
  44. CYANA Command: pcs make
  45. CYANA Command: pcs rhombic
  46. CYANA Command: peaks backcal
  47. CYANA Command: peaks calibrate
  48. CYANA Command: peaks count
  49. CYANA Command: peaks create
  50. CYANA Command: peaks delete
  51. CYANA Command: peaks deviations
  52. CYANA Command: peaks distance
  53. CYANA Command: peaks filter
  54. CYANA Command: peaks fit
  55. CYANA Command: peaks protonize
  56. CYANA Command: peaks select
  57. CYANA Command: peaks set
  58. CYANA Command: peaks simplecal
  59. CYANA Command: peaks split
  60. CYANA Command: peaks unassign
  61. CYANA Command: peaks unique
  62. CYANA Command: randomize
  63. CYANA Command: rdc count
  64. CYANA Command: rdc delete
  65. CYANA Command: rdc distance
  66. CYANA Command: rdc fittensor
  67. CYANA Command: rdc list
  68. CYANA Command: rdc make
  69. CYANA Command: rdc select
  70. CYANA Command: rdc set
  71. CYANA Command: rdc tensor
  72. CYANA Command: read ang
  73. CYANA Command: read bmrb
  74. CYANA Command: read cco
  75. CYANA Command: read cor
  76. CYANA Command: read lib
  77. CYANA Command: read lol
  78. CYANA Command: read nmrview
  79. CYANA Command: read pcs
  80. CYANA Command: read pdb
  81. CYANA Command: read peaks
  82. CYANA Command: read prot
  83. CYANA Command: read rdc
  84. CYANA Command: read upl
  85. CYANA Command: read xpk
  86. CYANA Command: read xplor
  87. CYANA Command: shifts adapt
  88. CYANA Command: shifts assign
  89. CYANA Command: shifts check
  90. CYANA Command: shifts collapse
  91. CYANA Command: shifts consolidate
  92. CYANA Command: shifts converge
  93. CYANA Command: shifts d2o
  94. CYANA Command: shifts incomplete
  95. CYANA Command: shifts initialize
  96. CYANA Command: shifts missing
  97. CYANA Command: shifts randomcoil
  98. CYANA Command: shifts renumber
  99. CYANA Command: shifts unusual
  100. CYANA Command: structures clear
  101. CYANA Command: structures copy
  102. CYANA Command: structures hbonds
  103. CYANA Command: structures insert
  104. CYANA Command: structures list
  105. CYANA Command: structures mean
  106. CYANA Command: structures overlay
  107. CYANA Command: structures secondary
  108. CYANA Command: structures select
  109. CYANA Command: structures sort
  110. CYANA Command: structures swap
  111. CYANA Command: structures violate
  112. CYANA Command: write ang
  113. CYANA Command: write assign
  114. CYANA Command: write bmrb
  115. CYANA Command: write cco
  116. CYANA Command: write cor
  117. CYANA Command: write pcs
  118. CYANA Command: write pdb
  119. CYANA Command: write peaks
  120. CYANA Command: write prot
  121. CYANA Command: write rdc
  122. CYANA Command: write sparky
  123. CYANA Command: write upl
  124. CYANA Command: write xpk
  125. CYANA Commands:
  126. CYANA Commands: angles delete
  127. CYANA Commands: angles select
  128. CYANA Commands: angles set
  129. CYANA Commands: atoms attach
  130. CYANA Commands: atoms list
  131. CYANA Commands: atoms select
  132. CYANA Commands: atoms set
  133. CYANA Commands: atoms stereo
  134. CYANA Commands: atoms swap
  135. CYANA Commands: couplings delete
  136. CYANA Commands: couplings make
  137. CYANA Commands: couplings select
  138. CYANA Commands: couplings set
  139. CYANA Commands: distances calculate
  140. CYANA Commands: distances check
  141. CYANA Commands: distances compare
  142. CYANA Commands: distances correct
  143. CYANA Commands: distances delete
  144. CYANA Commands: distances expand
  145. CYANA Commands: distances falsify
  146. CYANA Commands: distances hbond
  147. CYANA Commands: distances make
  148. CYANA Commands: distances select
  149. CYANA Commands: distances set
  150. CYANA Commands: distances split
  151. CYANA Commands: distances stat
  152. CYANA Commands: distances stereoexpand
  153. CYANA Commands: distances unique
  154. CYANA Commands: distances vdw
  155. CYANA Commands: gradient
  156. CYANA Commands: grid fragment
  157. CYANA Commands: grid memory
  158. CYANA Commands: grid search
  159. CYANA Commands: grid swap
  160. CYANA Commands: library check
  161. CYANA Commands: library mirror
  162. CYANA Commands: library new
  163. CYANA Commands: library remove
  164. CYANA Commands: library rename
  165. CYANA Commands: library replace
  166. CYANA Commands: molecules define
  167. CYANA Commands: molecules identity
  168. CYANA Commands: molecules symdist
  169. CYANA Commands: pcs axial
  170. CYANA Commands: pcs count
  171. CYANA Commands: pcs delete
  172. CYANA Commands: pcs list
  173. CYANA Commands: pcs make
  174. CYANA Commands: pcs rhombic
  175. CYANA Commands: pcs select
  176. CYANA Commands: pcs set
  177. CYANA Commands: peaks backcal
  178. CYANA Commands: peaks calibrate
  179. CYANA Commands: peaks count
  180. CYANA Commands: peaks create
  181. CYANA Commands: peaks delete
  182. CYANA Commands: peaks deviations
  183. CYANA Commands: peaks distance
  184. CYANA Commands: peaks filter
  185. CYANA Commands: peaks fit
  186. CYANA Commands: peaks protonize
  187. CYANA Commands: peaks select
  188. CYANA Commands: peaks set
  189. CYANA Commands: peaks simplecal
  190. CYANA Commands: peaks split
  191. CYANA Commands: peaks unassign
  192. CYANA Commands: peaks unique
  193. CYANA Commands: randomize
  194. CYANA Commands: rdc count
  195. CYANA Commands: rdc delete
  196. CYANA Commands: rdc distance
  197. CYANA Commands: rdc fittensor
  198. CYANA Commands: rdc list
  199. CYANA Commands: rdc make
  200. CYANA Commands: rdc select
  201. CYANA Commands: rdc set
  202. CYANA Commands: rdc tensor
  203. CYANA Commands: read aco
  204. CYANA Commands: read ang
  205. CYANA Commands: read bmrb
  206. CYANA Commands: read cco
  207. CYANA Commands: read cor
  208. CYANA Commands: read lib
  209. CYANA Commands: read lol
  210. CYANA Commands: read nmrview
  211. CYANA Commands: read pcs
  212. CYANA Commands: read pdb
  213. CYANA Commands: read peaks
  214. CYANA Commands: read prot
  215. CYANA Commands: read rdc
  216. CYANA Commands: read upl
  217. CYANA Commands: read xpk
  218. CYANA Commands: read xplor
  219. CYANA Commands: shifts adapt
  220. CYANA Commands: shifts assign
  221. CYANA Commands: shifts check
  222. CYANA Commands: shifts collapse
  223. CYANA Commands: shifts consolidate
  224. CYANA Commands: shifts converge
  225. CYANA Commands: shifts d2o
  226. CYANA Commands: shifts incomplete
  227. CYANA Commands: shifts initialize
  228. CYANA Commands: shifts missing
  229. CYANA Commands: shifts randomcoil
  230. CYANA Commands: shifts renumber
  231. CYANA Commands: shifts unusual
  232. CYANA Commands: structures clear
  233. CYANA Commands: structures copy
  234. CYANA Commands: structures hbonds
  235. CYANA Commands: structures insert
  236. CYANA Commands: structures list
  237. CYANA Commands: structures mean
  238. CYANA Commands: structures overlay
  239. CYANA Commands: structures secondary
  240. CYANA Commands: structures select
  241. CYANA Commands: structures sort
  242. CYANA Commands: structures swap
  243. CYANA Commands: structures violate
  244. CYANA Commands: write aco
  245. CYANA Commands: write ang
  246. CYANA Commands: write assign
  247. CYANA Commands: write bmrb
  248. CYANA Commands: write cco
  249. CYANA Commands: write cor
  250. CYANA Commands: write lib
  251. CYANA Commands: write lol
  252. CYANA Commands: write pcs
  253. CYANA Commands: write pdb
  254. CYANA Commands: write peaks
  255. CYANA Commands: write prot
  256. CYANA Commands: write rdc
  257. CYANA Commands: write seq
  258. CYANA Commands: write upl
  259. CYANA Commands: write xpk
  260. CYANA Function: acoviol
  261. CYANA Function: anam
  262. CYANA Function: anamlib
  263. CYANA Function: anamo
  264. CYANA Function: angle
  265. CYANA Function: anglelong
  266. CYANA Function: asel
  267. CYANA Function: atom
  268. CYANA Function: atomlong
  269. CYANA Function: bondangle
  270. CYANA Function: cco
  271. CYANA Function: coord
  272. CYANA Function: cstab
  273. CYANA Function: cyanadir
  274. CYANA Function: dcosel
  275. CYANA Function: derms
  276. CYANA Function: diastereotopic
  277. CYANA Function: dist
  278. CYANA Function: dmax
  279. CYANA Function: dmean
  280. CYANA Function: dnam
  281. CYANA Function: dnamlib
  282. CYANA Function: drms
  283. CYANA Function: dsel
  284. CYANA Function: dshift
  285. CYANA Function: dstddev
  286. CYANA Function: dval
  287. CYANA Function: ekin
  288. CYANA Function: ekmean
  289. CYANA Function: ekrms
  290. CYANA Function: element
  291. CYANA Function: emean
  292. CYANA Function: erms
  293. CYANA Function: functions
  294. CYANA Function: heavyatom
  295. CYANA Function: iacod
  296. CYANA Function: iaunit
  297. CYANA Function: iccoa
  298. CYANA Function: ida
  299. CYANA Function: idcoa
  300. CYANA Function: idord
  301. CYANA Function: idr
  302. CYANA Function: ifira
  303. CYANA Function: ifird
  304. CYANA Function: indco
  305. CYANA Function: inpk
  306. CYANA Function: intervals
  307. CYANA Function: ipa
  308. CYANA Function: ipel
  309. CYANA Function: iprev
  310. CYANA Function: irnum
  311. CYANA Function: lda
  312. CYANA Function: libdir
  313. CYANA Function: magnitude
  314. CYANA Function: matchangle
  315. CYANA Function: matchatom
  316. CYANA Function: na
  317. CYANA Function: naa
  318. CYANA Function: naco
  319. CYANA Function: narmsd
  320. CYANA Function: nassign
  321. CYANA Function: nbond
  322. CYANA Function: ncco
  323. CYANA Function: nconf
  324. CYANA Function: nd
  325. CYANA Function: ndcdis
  326. CYANA Function: ndco
  327. CYANA Function: ndcres
  328. CYANA Function: ndfree
  329. CYANA Function: ndim
  330. CYANA Function: nlevel
  331. CYANA Function: nlol
  332. CYANA Function: nmol
  333. CYANA Function: npcs
  334. CYANA Function: npeaks
  335. CYANA Function: npkl
  336. CYANA Function: nr
  337. CYANA Function: nrdc
  338. CYANA Function: nsel
  339. CYANA Function: nseldis
  340. CYANA Function: nshifts
  341. CYANA Function: numpro
  342. CYANA Function: nupl
  343. CYANA Function: orientations
  344. CYANA Function: pi
  345. CYANA Function: psel
  346. CYANA Function: pseudoatom
  347. CYANA Function: rad
  348. CYANA Function: rhombicity
  349. CYANA Function: rid
  350. CYANA Function: rmsdcurr
  351. CYANA Function: rmsdmax
  352. CYANA Function: rmsdmean
  353. CYANA Function: rmsdmin
  354. CYANA Function: rmsdpair
  355. CYANA Function: rmsdstd
  356. CYANA Function: rnam
  357. CYANA Function: rnamlib
  358. CYANA Function: rnum
  359. CYANA Function: seldis
  360. CYANA Function: selected
  361. CYANA Function: selrange
  362. CYANA Function: selrangeshort
  363. CYANA Function: shift
  364. CYANA Function: stereopartner
  365. CYANA Function: tf
  366. CYANA Function: tfcalc
  367. CYANA Function: tfmax
  368. CYANA Function: tfmin
  369. CYANA Function: tfres
  370. CYANA Function: timestep
  371. CYANA Function: tolcco
  372. CYANA Function: tor
  373. CYANA Functions: acoviol
  374. CYANA Functions: anam
  375. CYANA Functions: anamlib
  376. CYANA Functions: angle
  377. CYANA Functions: anglelong
  378. CYANA Functions: atom
  379. CYANA Functions: atomlong
  380. CYANA Functions: bondangle
  381. CYANA Functions: cco
  382. CYANA Functions: coord
  383. CYANA Functions: cstab
  384. CYANA Functions: cyanadir
  385. CYANA Functions: dcosel
  386. CYANA Functions: derms
  387. CYANA Functions: diastereotopic
  388. CYANA Functions: dist
  389. CYANA Functions: dmax
  390. CYANA Functions: dmean
  391. CYANA Functions: dnam
  392. CYANA Functions: dnamlib
  393. CYANA Functions: drms
  394. CYANA Functions: dshift
  395. CYANA Functions: dstddev
  396. CYANA Functions: dval
  397. CYANA Functions: ekin
  398. CYANA Functions: ekmean
  399. CYANA Functions: ekrms
  400. CYANA Functions: element
  401. CYANA Functions: emean
  402. CYANA Functions: erms
  403. CYANA Functions: functions
  404. CYANA Functions: heavyatom
  405. CYANA Functions: iacod
  406. CYANA Functions: iaunit
  407. CYANA Functions: iccoa
  408. CYANA Functions: ida
  409. CYANA Functions: idcoa
  410. CYANA Functions: idord
  411. CYANA Functions: idr
  412. CYANA Functions: ifira
  413. CYANA Functions: ifird
  414. CYANA Functions: indco
  415. CYANA Functions: inpk
  416. CYANA Functions: intervals
  417. CYANA Functions: ipa
  418. CYANA Functions: ipel
  419. CYANA Functions: iprev
  420. CYANA Functions: irnum
  421. CYANA Functions: lda
  422. CYANA Functions: libdir
  423. CYANA Functions: magnitude
  424. CYANA Functions: matchangle
  425. CYANA Functions: matchatom
  426. CYANA Functions: na
  427. CYANA Functions: naa
  428. CYANA Functions: naco
  429. CYANA Functions: narmsd
  430. CYANA Functions: nassign
  431. CYANA Functions: nbond
  432. CYANA Functions: ncco
  433. CYANA Functions: nconf
  434. CYANA Functions: nd
  435. CYANA Functions: ndcdis
  436. CYANA Functions: ndco
  437. CYANA Functions: ndcres
  438. CYANA Functions: ndfree
  439. CYANA Functions: ndim
  440. CYANA Functions: nlevel
  441. CYANA Functions: nlol
  442. CYANA Functions: nmol
  443. CYANA Functions: npeaks
  444. CYANA Functions: npkl
  445. CYANA Functions: nr
  446. CYANA Functions: nsel
  447. CYANA Functions: nseldis
  448. CYANA Functions: nshifts
  449. CYANA Functions: numpro
  450. CYANA Functions: nupl
  451. CYANA Functions: orientations
  452. CYANA Functions: pi
  453. CYANA Functions: pseudoatom
  454. CYANA Functions: rad
  455. CYANA Functions: rhombicity
  456. CYANA Functions: rid
  457. CYANA Functions: rmsdcurr
  458. CYANA Functions: rmsdmax
  459. CYANA Functions: rmsdmean
  460. CYANA Functions: rmsdmin
  461. CYANA Functions: rmsdpair
  462. CYANA Functions: rmsdstd
  463. CYANA Functions: rnam
  464. CYANA Functions: rnamlib
  465. CYANA Functions: rnum
  466. CYANA Functions: seldis
  467. CYANA Functions: selected
  468. CYANA Functions: selrange
  469. CYANA Functions: selrangeshort
  470. CYANA Functions: shift
  471. CYANA Functions: stereopartner
  472. CYANA Functions: tf
  473. CYANA Functions: tfcalc
  474. CYANA Functions: tfmax
  475. CYANA Functions: tfmin
  476. CYANA Functions: tfres
  477. CYANA Functions: timestep
  478. CYANA Functions: tolcco
  479. CYANA Functions: tor
  480. CYANA Macro: anneal
  481. CYANA Macro: calc all
  482. CYANA Macro: calibration
  483. CYANA Macro: cashiftaco
  484. CYANA Macro: cashiftplot
  485. CYANA Macro: cisprocheck
  486. CYANA Macro: coco
  487. CYANA Macro: cyscheck
  488. CYANA Macro: dcostat
  489. CYANA Macro: dcotab
  490. CYANA Macro: flip
  491. CYANA Macro: forall
  492. CYANA Macro: garant
  493. CYANA Macro: graf
  494. CYANA Macro: gridplot
  495. CYANA Macro: hbond
  496. CYANA Macro: init
  497. CYANA Macro: initsafe
  498. CYANA Macro: karplus
  499. CYANA Macro: kringle
  500. CYANA Macro: longrangeplot

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