Tutorials: Difference between revisions
Jump to navigation
Jump to search
No edit summary |
|||
| Line 1: | Line 1: | ||
== Downloads == | == Downloads == | ||
* Latest [[Media:cyana-3.0demo-linux090713.tgz|demo version of CYANA 3. | * Latest [[Media:cyana-3.0demo-linux090713.tgz|demo version of CYANA 3.0beta]] for Linux (13-07-2009)<br>The demo version has the full functionality of the program for the protein sequences that are used in the example calculations. The regular CYANA version 3.0 is not released yet. | ||
* [[Media:Cyana-3.0-demo.zip|Input data files]] for example calculations (also included with the demo version of CYANA) | * [[Media:Cyana-3.0-demo.zip|Input data files]] for example calculations (also included with the demo version of CYANA) | ||
Revision as of 21:12, 24 September 2009
Downloads
- Latest demo version of CYANA 3.0beta for Linux (13-07-2009)
The demo version has the full functionality of the program for the protein sequences that are used in the example calculations. The regular CYANA version 3.0 is not released yet. - Input data files for example calculations (also included with the demo version of CYANA)
INCLAN Tutorials
CYANA Tutorials
CYANA example calculations
- Basic structure calculation starting from given restraints
- Structure calculation using manually assigned NOESY peak lists
- Structure calculation with automated NOESY assignment
- Homodimer structure calculation with automated NOESY assignment
- Structure calculations using residual dipolar coupling restraints
- Structure calculations using pseudocontact shift restraints
- Various additional tasks
- Analyze a structure
- Angle restraints based on CA chemical shifts
- Create restraints for disulfide bonds
- Systematic local conformation analysis
- Create restraints for hydrogen bonds
- Merge multiple restraints files
- Migrate data from Cyana 1.x or Dyana
- Migrate data from Xplor or CNS
- Modify upper distance limits
- NOE statistics and plots
- Prepare files for PDB and BMRB deposition
- Create restraints to close flexible PRO rings
- Ramachandran plot and rotamer restraints
- Renumber chemical shifts and peaks
- Calculate RMSD values and mean structures
- Angle restraints from the program TALOS
Input file formats
- Residue library file (.lib)
- Sequence file (.seq)
- Distance restraint file (.upl, .lol)
- Torsion angle restraint file (.aco)
- Residual dipolar coupling restraint file (.rdc)
- Pseudocontact shift restraint file (.pcs)
- DG Cartesian coordinate file (.cor)
- PDB coordinate file (.pdb)
- Torsion angle file (.ang)
- XEASY chemical shift list file (.prot)
- BMRB chemical shift list file (.bmrb)
- XEASY peak list file (.peaks)
- NMRView peak list file (.xpk)