CYANA Commands: Difference between revisions
Jump to navigation
Jump to search
(→E) |
|||
| (27 intermediate revisions by 3 users not shown) | |||
| Line 14: | Line 14: | ||
* [[CYANA Command: angstat list|angstat list]] | * [[CYANA Command: angstat list|angstat list]] | ||
* [[CYANA Command: angstat make|angstat make]] | * [[CYANA Command: angstat make|angstat make]] | ||
* [[CYANA Macro: anneal|anneal]] (macro) | |||
* [[CYANA Command: assign|assign]] | * [[CYANA Command: assign|assign]] | ||
* [[CYANA Command: atoms attach|atoms attach]] | * [[CYANA Command: atoms attach|atoms attach]] | ||
| Line 26: | Line 27: | ||
* [[CYANA Command: atoms stereo|atoms stereo]] | * [[CYANA Command: atoms stereo|atoms stereo]] | ||
* [[CYANA Command: atoms swap|atoms swap]] | * [[CYANA Command: atoms swap|atoms swap]] | ||
=== C === | === C === | ||
* [[CYANA Macro: calc_all|calc_all]] (macro) | |||
* [[CYANA Macro: caliba|caliba]] (macro) | |||
* [[CYANA Command: calibrate|calibrate]] | * [[CYANA Command: calibrate|calibrate]] | ||
* [[CYANA Macro: calibration|calibration]] (macro) | |||
* [[CYANA Macro: cashiftaco|cashiftaco]] (macro) | |||
* [[CYANA Macro: cashiftplot|cashiftplot]] (macro) | |||
* [[CYANA Macro: cisprocheck|cisprocheck]] (macro) | |||
* [[CYANA Macro: coco|coco]] (macro) | |||
* [[CYANA Command: couplings count|couplings count]] | * [[CYANA Command: couplings count|couplings count]] | ||
* [[CYANA Command: couplings delete|couplings delete]] | * [[CYANA Command: couplings delete|couplings delete]] | ||
| Line 33: | Line 42: | ||
* [[CYANA Command: couplings select|couplings select]] | * [[CYANA Command: couplings select|couplings select]] | ||
* [[CYANA Command: couplings set|couplings set]] | * [[CYANA Command: couplings set|couplings set]] | ||
* [[CYANA Macro: cyscheck|cyscheck]] (macro) | |||
=== D === | === D === | ||
* [[CYANA Macro: dcostat|dcostat]] (macro) | |||
* [[CYANA Macro: dcotab|dcotab]] (macro) | |||
* [[CYANA Macro: deposit|deposit]] (macro) | |||
* [[CYANA Macro: dinucleotide|dinucleotide]] (macro) | |||
* [[CYANA Command: distances calculate|distances calculate]] | * [[CYANA Command: distances calculate|distances calculate]] | ||
* [[CYANA Command: distances check|distances check]] | * [[CYANA Command: distances check|distances check]] | ||
| Line 55: | Line 69: | ||
* [[CYANA Command: distances unique|distances unique]] | * [[CYANA Command: distances unique|distances unique]] | ||
* [[CYANA Command: distances vdw|distances vdw]] | * [[CYANA Command: distances vdw|distances vdw]] | ||
=== E === | |||
* [[CYANA Command: enoe init |enoe init]] | |||
* [[CYANA Command: enoe diag |enoe diag]] | |||
* [[CYANA Command: enoe cross |enoe cross]] | |||
* [[CYANA Command: enoe sig |enoe sigma]] | |||
* [[CYANA Command: enoe reff |enoe reff]] | |||
* [[CYANA Command: enoe restraint |enoe restraint]] | |||
* [[CYANA Command: enoe spindiff |enoe spindiff]] | |||
* [[CYANA Command: enoe spdcorr |enoe spdcorr]] | |||
* [[CYANA Command: enoe twospin |enoe twospin]] | |||
* [[CYANA Command: enoe plotbup |enoe plotbup]] | |||
* [[CYANA Command: enoe plotdec |enoe plotdec]] | |||
* [[CYANA Command: enoe overview |enoe overview]] | |||
* [[CYANA Command: enoe values |enoe values]] | |||
=== F === | |||
* [[CYANA Macro: flip|flip]] (macro) | |||
* [[CYANA Macro: forall|forall]] (macro) | |||
=== G === | === G === | ||
* [[CYANA Macro: garant|garant]] (macro) | |||
* [[CYANA Command: gradient|gradient]] | * [[CYANA Command: gradient|gradient]] | ||
* [[CYANA Macro: graf|graf]] (macro) | |||
* [[CYANA Command: grid aco|grid aco]] | * [[CYANA Command: grid aco|grid aco]] | ||
* [[CYANA Command: grid correlate|grid correlate]] | * [[CYANA Command: grid correlate|grid correlate]] | ||
* [[CYANA Command: grid fragment|grid fragment]] | * [[CYANA Command: grid fragment|grid fragment]] | ||
* [[CYANA Command: grid memory|grid memory]] | * [[CYANA Command: grid memory|grid memory]] | ||
* [[CYANA Macro: gridplot|gridplot]] (macro) | |||
* [[CYANA Command: grid search|grid search]] | * [[CYANA Command: grid search|grid search]] | ||
* [[CYANA Command: grid swap|grid swap]] | * [[CYANA Command: grid swap|grid swap]] | ||
=== H === | |||
* [[CYANA Macro: habas|habas]] (macro) | |||
* [[CYANA Macro: hbond|hbond]] (macro) | |||
=== I === | |||
* [[CYANA Macro: init|init]] (macro) | |||
* [[CYANA Macro: initsafe|initsafe]] (macro) | |||
=== K === | |||
* [[CYANA Macro: karplus|karplus]] (macro) | |||
* [[CYANA Macro: kringle|kringle]] (macro) | |||
=== L === | === L === | ||
* [[CYANA Command: library check|library check]] | * [[CYANA Command: library check|library check]] | ||
| Line 70: | Line 114: | ||
* [[CYANA Command: library rename|library rename]] | * [[CYANA Command: library rename|library rename]] | ||
* [[CYANA Command: library replace|library replace]] | * [[CYANA Command: library replace|library replace]] | ||
* [[CYANA Macro: longrangeplot|longrangeplot]] (macro) | |||
* [[CYANA Macro: loop|loop]] (macro) | |||
=== M === | === M === | ||
* [[CYANA Macro: makeaco|makeaco]] (macro) | |||
* [[CYANA Command: md|md]] | * [[CYANA Command: md|md]] | ||
* [[CYANA Command: minimize|minimize]] | * [[CYANA Command: minimize|minimize]] | ||
| Line 76: | Line 123: | ||
* [[CYANA Command: molecules identity|molecules identity]] | * [[CYANA Command: molecules identity|molecules identity]] | ||
* [[CYANA Command: molecules symdist|molecules symdist]] | * [[CYANA Command: molecules symdist|molecules symdist]] | ||
=== N === | |||
* [[CYANA Macro: noeassign|noeassign]] (macro) | |||
=== O === | |||
* [[CYANA Macro: onelettercode|onelettercode]] (macro) | |||
* [[CYANA Macro: opalprefine|opalprefine]] (macro) | |||
* [[CYANA Macro: overlay|overlay]] (macro) | |||
* [[CYANA Macro: overview|overview]] (macro) | |||
=== P === | === P === | ||
* [[CYANA Command: pcs axial|pcs axial]] | * [[CYANA Command: pcs axial|pcs axial]] | ||
| Line 85: | Line 139: | ||
* [[CYANA Command: pcs select|pcs select]] | * [[CYANA Command: pcs select|pcs select]] | ||
* [[CYANA Command: pcs set|pcs set]] | * [[CYANA Command: pcs set|pcs set]] | ||
* [[CYANA Macro: peakcheck|peakcheck]] (macro) | |||
* [[CYANA Command: peaks backcal|peaks backcal]] | * [[CYANA Command: peaks backcal|peaks backcal]] | ||
* [[CYANA Command: peaks calibrate|peaks calibrate]] | * [[CYANA Command: peaks calibrate|peaks calibrate]] | ||
| Line 101: | Line 156: | ||
* [[CYANA Command: peaks unassign|peaks unassign]] | * [[CYANA Command: peaks unassign|peaks unassign]] | ||
* [[CYANA Command: peaks unique|peaks unique]] | * [[CYANA Command: peaks unique|peaks unique]] | ||
* [[CYANA Macro: prolinebond|prolinebond]] (macro) | |||
=== R === | |||
* [[CYANA Macro: ramaaco|ramaaco]] (macro) | |||
* [[CYANA Macro: ramaplot|ramaplot]] (macro) | |||
* [[CYANA Macro: random_all|random_all]] (macro) | |||
* [[CYANA Command: randomize|randomize]] | * [[CYANA Command: randomize|randomize]] | ||
* [[CYANA Command: rdc count|rdc count]] | * [[CYANA Command: rdc count|rdc count]] | ||
* [[CYANA Command: rdc delete|rdc delete]] | * [[CYANA Command: rdc delete|rdc delete]] | ||
* [[CYANA Command: rdc distance|rdc distance]] | * [[CYANA Command: rdc distance|rdc distance]] | ||
* [[CYANA Macro: rdcdistances|rdcdistances]] (macro) | |||
* [[CYANA Command: rdc fittensor|rdc fittensor]] | * [[CYANA Command: rdc fittensor|rdc fittensor]] | ||
* [[CYANA Command: rdc list|rdc list]] | * [[CYANA Command: rdc list|rdc list]] | ||
| Line 113: | Line 173: | ||
* [[CYANA Command: rdc tensor|rdc tensor]] | * [[CYANA Command: rdc tensor|rdc tensor]] | ||
* [[CYANA Command: read aco|read aco]] | * [[CYANA Command: read aco|read aco]] | ||
* [[CYANA Macro: read_all|read_all]] (macro) | |||
* [[CYANA Command: read ang|read ang]] | * [[CYANA Command: read ang|read ang]] | ||
* [[CYANA Command: read bmrb|read bmrb]] | * [[CYANA Command: read bmrb|read bmrb]] | ||
* [[CYANA Command: read cco|read cco]] | * [[CYANA Command: read cco|read cco]] | ||
* [[CYANA Command: read cor|read cor]] | * [[CYANA Command: read cor|read cor]] | ||
* [[CYANA Macro: readdata|readdata]] (macro) | |||
* [[CYANA Command: read lib|read lib]] | * [[CYANA Command: read lib|read lib]] | ||
* [[CYANA Command: read lol|read lol]] | * [[CYANA Command: read lol|read lol]] | ||
| Line 125: | Line 187: | ||
* [[CYANA Command: read prot|read prot]] | * [[CYANA Command: read prot|read prot]] | ||
* [[CYANA Command: read rdc|read rdc]] | * [[CYANA Command: read rdc|read rdc]] | ||
* [[CYANA Command: read rho|read rho]] | |||
* [[CYANA Command: read tab|read tab]] | |||
* [[CYANA Command: read upl|read upl]] | * [[CYANA Command: read upl|read upl]] | ||
* [[CYANA Command: read xpk|read xpk]] | * [[CYANA Command: read xpk|read xpk]] | ||
* [[CYANA Command: read xplor|read xplor]] | * [[CYANA Command: read xplor|read xplor]] | ||
* [[CYANA Macro: redac|redac]] (macro) | |||
* [[CYANA Macro: renumber|renumber]] (macro) | |||
* [[CYANA Macro: rmsd|rmsd]] (macro) | |||
* [[CYANA Macro: rotameraco|rotameraco]] (macro) | |||
=== S === | === S === | ||
* [[CYANA Macro: savestereo|savestereo]] (macro) | |||
* [[CYANA Macro: seqplot|seqplot]] (macro) | |||
* [[CYANA Command: shifts adapt|shifts adapt]] | * [[CYANA Command: shifts adapt|shifts adapt]] | ||
* [[CYANA Command: shifts assign|shifts assign]] | * [[CYANA Command: shifts assign|shifts assign]] | ||
| Line 142: | Line 213: | ||
* [[CYANA Command: shifts renumber|shifts renumber]] | * [[CYANA Command: shifts renumber|shifts renumber]] | ||
* [[CYANA Command: shifts unusual|shifts unusual]] | * [[CYANA Command: shifts unusual|shifts unusual]] | ||
* [[CYANA Macro: ssbond|ssbond]] (macro) | |||
* [[CYANA Macro: stereoassign|stereoassign]] (macro) | |||
* [[CYANA Macro: structcalc|structcalc]] (macro) | |||
* [[CYANA Command: structures clear|structures clear]] | * [[CYANA Command: structures clear|structures clear]] | ||
* [[CYANA Command: structures copy|structures copy]] | * [[CYANA Command: structures copy|structures copy]] | ||
| Line 154: | Line 228: | ||
* [[CYANA Command: structures swap|structures swap]] | * [[CYANA Command: structures swap|structures swap]] | ||
* [[CYANA Command: structures violate|structures violate]] | * [[CYANA Command: structures violate|structures violate]] | ||
* [[CYANA Macro: sugarbond|sugarbond]] (macro) | |||
* [[CYANA Macro: sugarring|sugarring]] (macro) | |||
* [[CYANA Macro: syscheck|syscheck]] (macro) | |||
=== T === | |||
* [[CYANA Macro: talos|talos]] (macro) | |||
* [[CYANA Macro: talosaco|talosaco]] (macro) | |||
* [[CYANA Macro: taloslist|taloslist]] (macro) | |||
* [[CYANA Macro: threelettercode|threelettercode]] (macro) | |||
* [[CYANA Macro: translate|translate]] (macro) | |||
=== V === | |||
* [[CYANA Macro: vtfmin|vtfmin]] (macro) | |||
=== W === | === W === | ||
* [[CYANA Macro: watsoncrick|watsoncrick]] (macro) | |||
* [[CYANA Command: write aco|write aco]] | * [[CYANA Command: write aco|write aco]] | ||
* [[CYANA Macro: write_all|write_all]] (macro) | |||
* [[CYANA Command: write ang|write ang]] | * [[CYANA Command: write ang|write ang]] | ||
* [[CYANA Command: write assign|write assign]] | * [[CYANA Command: write assign|write assign]] | ||
| Line 168: | Line 257: | ||
* [[CYANA Command: write prot|write prot]] | * [[CYANA Command: write prot|write prot]] | ||
* [[CYANA Command: write rdc|write rdc]] | * [[CYANA Command: write rdc|write rdc]] | ||
* [[CYANA Command: write rho|write rho]] | |||
* [[CYANA Command: write seq|write seq]] | * [[CYANA Command: write seq|write seq]] | ||
* [[CYANA Command: write sparky|write sparky]] | * [[CYANA Command: write sparky|write sparky]] | ||
* [[CYANA Command: write upl|write upl]] | * [[CYANA Command: write upl|write upl]] | ||
* [[CYANA Command: write xpk|write xpk]] | * [[CYANA Command: write xpk|write xpk]] | ||
</div> | </div> | ||
Latest revision as of 12:45, 19 February 2020
CYANA Commands
A
- angles count
- angles delete
- angles flip
- angles ramachandran
- angles select
- angles set
- angles split
- angstat clear
- angstat list
- angstat make
- anneal (macro)
- assign
- atoms attach
- atoms calibrate
- atoms count
- atoms glomsa
- atoms list
- atoms observable
- atoms select
- atoms set
- atoms shifts
- atoms stereo
- atoms swap
C
- calc_all (macro)
- caliba (macro)
- calibrate
- calibration (macro)
- cashiftaco (macro)
- cashiftplot (macro)
- cisprocheck (macro)
- coco (macro)
- couplings count
- couplings delete
- couplings make
- couplings select
- couplings set
- cyscheck (macro)
D
- dcostat (macro)
- dcotab (macro)
- deposit (macro)
- dinucleotide (macro)
- distances calculate
- distances check
- distances combine
- distances compare
- distances correct
- distances count
- distances delete
- distances expand
- distances falsify
- distances hbond
- distances make
- distances modify
- distances multiple
- distances select
- distances set
- distances short
- distances split
- distances stat
- distances stereoexpand
- distances unique
- distances vdw
E
- enoe init
- enoe diag
- enoe cross
- enoe sigma
- enoe reff
- enoe restraint
- enoe spindiff
- enoe spdcorr
- enoe twospin
- enoe plotbup
- enoe plotdec
- enoe overview
- enoe values
F
G
- garant (macro)
- gradient
- graf (macro)
- grid aco
- grid correlate
- grid fragment
- grid memory
- gridplot (macro)
- grid search
- grid swap
H
I
K
L
- library check
- library mirror
- library new
- library remove
- library rename
- library replace
- longrangeplot (macro)
- loop (macro)
M
N
- noeassign (macro)
O
- onelettercode (macro)
- opalprefine (macro)
- overlay (macro)
- overview (macro)
P
- pcs axial
- pcs count
- pcs delete
- pcs list
- pcs make
- pcs rhombic
- pcs select
- pcs set
- peakcheck (macro)
- peaks backcal
- peaks calibrate
- peaks count
- peaks create
- peaks delete
- peaks deviations
- peaks distance
- peaks filter
- peaks fit
- peaks protonize
- peaks select
- peaks set
- peaks simplecal
- peaks split
- peaks unassign
- peaks unique
- prolinebond (macro)
R
- ramaaco (macro)
- ramaplot (macro)
- random_all (macro)
- randomize
- rdc count
- rdc delete
- rdc distance
- rdcdistances (macro)
- rdc fittensor
- rdc list
- rdc make
- rdc select
- rdc set
- rdc tensor
- read aco
- read_all (macro)
- read ang
- read bmrb
- read cco
- read cor
- readdata (macro)
- read lib
- read lol
- read nmrview
- read pcs
- read pdb
- read peaks
- read prot
- read rdc
- read rho
- read tab
- read upl
- read xpk
- read xplor
- redac (macro)
- renumber (macro)
- rmsd (macro)
- rotameraco (macro)
S
- savestereo (macro)
- seqplot (macro)
- shifts adapt
- shifts assign
- shifts check
- shifts collapse
- shifts consolidate
- shifts converge
- shifts d2o
- shifts incomplete
- shifts initialize
- shifts missing
- shifts randomcoil
- shifts renumber
- shifts unusual
- ssbond (macro)
- stereoassign (macro)
- structcalc (macro)
- structures clear
- structures copy
- structures hbonds
- structures insert
- structures list
- structures mean
- structures overlay
- structures secondary
- structures select
- structures sort
- structures swap
- structures violate
- sugarbond (macro)
- sugarring (macro)
- syscheck (macro)
T
- talos (macro)
- talosaco (macro)
- taloslist (macro)
- threelettercode (macro)
- translate (macro)
V
- vtfmin (macro)