CYANA 3.0 Reference Manual
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- INCLAN (INteractive Command LANguage)
- CYANA scripts
- CYANA commands
- CYANA functions
- CYANA variables
CYANA Functions
- acoviol
- anam
- anamlib
- anamo
- angle
- anglelong
- asel
- atom
- atomlong
- bondangle
- calconst
- calscale
- cco
- coord
- cstab
- cyanadir
- dcosel
- derms
- diastereotopic
- dist
- dmax
- dmean
- dnam
- dnamlib
- drms
- anam
- dsel
- dstddev
- dval
- ekin
- ekmean
- ekrms
- element
- emean
- erms
- functions
- heavyatom
- iacod
- iar
- iaunit
- ibond
- iccoa
- ida
- idcoa
- idord
- idr
- ifira
- ifird
- indco
- inpk
- interval
- intervals
- ipa
- ipel
- iprev
- irnum
- istruct
- lda
- libdir
- magnitude
- matchangle
- matchatom
- naa
- naco
- na
- narmsd
- nassign
- nbond
- ncco
- nconf
- ndcdis
- ndco
- ndcres
- nd
- ndfree
- ndim
- nlevel
- nlol
- nmol
- npcs
- npeaks
- npkl
- nr
- nrdc
- nsel
- nseldis
- nshifts
- nstructall
- nstruct
- numpro
- nupl
- orientations
- pi
- psel
- pseudoatom
- rad
- rhombicity
- rid
- rmsdcurr
- rmsdmax
- rmsdmean
- rmsdmin
- rmsdpair
- rmsdstd
- rnam
- rnamlib
- rnum
- seldis
- selected
- selrange
- selrangeshort
- shift
- stereopartner
- tfcalc
- tf
- tfmax
- tfmin
- tfres
- timestep
- tolcco
- tor
CYANA Variables
- aco_type
- combine_oi
- corr14
- cross_oi_rdc
- cut_aco
- cut_cco
- cut_lol
- cut_pcs
- cut_rdc
- cut_tflocal
- cut_upl
- cut_vdw
- expand
- gridpoints
- gridtime
- hb_ang
- hb_len
- level
- nstep
- obsdis
- oie_k1
- oie_k2
- oi_k1
- oi_k2
- oip_end
- oip_max
- oip_min
- oip_scaling
- oip_start
- ois_k1
- ois_k2
- opt_tensor_count
- opt_tensor
- opt_tensor_start
- opt_tensor_treshold
- pcs_end_k1
- pcs_start_k1
- pcs_ws_on
- positive_gyros
- pseudo
- rdc_potential
- rdc_vas1_on
- rdc_vas2_on
- rdc_vts_on
- seed
- soft_aco
- soft_cco
- soft_lol
- soft_upl
- soft_vdw
- swap
- tf_asymptote
- tf_offset
- tf_type
- tolerance
- tolpeak
- trad_end_k1
- trad_start_k1
- upl_values
- use_svd
- variables
- vdw_power
- viocap
- weight_aco
- weight_cco
- weight_ide
- weight_lol
- weight_pcs
- weight_rdc
- weight_sym
- weight_upl
- weight_vdw
Selections
Input files
- Residue library file (.lib)
- Sequence file (.seq)
- Distance restraint file (.upl, .lol)
- Torsion angle restraint file (.aco)
- Residual dipolar coupling restraint file (.rdc)
- Pseudocontact shift restraint file (.pcs)
- DG Cartesian coordinate file (.cor)
- PDB coordinate file (.pdb)
- Torsion angle file (.ang)
- XEASY chemical shift list file (.prot)
- BMRB chemical shift list file (.bmrb)
- XEASY peak list file (.peaks)
- NMRView peak list file (.xpk)