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| == INCLAN == | | __NOTOC__ |
| | == INCLAN (INteractive Command LANguage) == |
|
| |
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| <div style="column-count:4;-moz-column-count:4;-webkit-column-count:4">
| | * [[INCLAN Reference Manual]] |
| * [[INCLAN: alias|alias]] | |
| * [[INCLAN: ask|ask]]
| |
| * [[INCLAN: break, exit, quit, return|break, exit, quit, return]]
| |
| * [[INCLAN: do|do]]
| |
| * [[INCLAN: echo|echo]]
| |
| * [[INCLAN: erract|erract]]
| |
| * [[INCLAN: eval, show, set, unset, external|eval, show, set, unset, external]]
| |
| * [[INCLAN: goto, go to|goto, go to]]
| |
| * [[INCLAN: if|if]]
| |
| * [[INCLAN: info|info]]
| |
| * [[INCLAN: intrinsics|intrinsics]]
| |
| * [[INCLAN: label|label]]
| |
| * [[INCLAN: nparam|nparam]]
| |
| * [[INCLAN: nproc|nproc]]
| |
| * [[INCLAN: parameter|parameter]]
| |
| * [[INCLAN: path|path]]
| |
| * [[INCLAN: print, error|print, error]]
| |
| * [[INCLAN: prompt|prompt]]
| |
| * [[INCLAN: protocol|protocol]]
| |
| * [[INCLAN: readline|readline]]
| |
| * [[INCLAN: remove|remove]]
| |
| * [[INCLAN: sleep|sleep]]
| |
| * [[INCLAN: special characters|special characters]]
| |
| * [[INCLAN: subroutine, command|subroutine, command]]
| |
| * [[INCLAN: syntax|syntax]]
| |
| * [[INCLAN: system|system]]
| |
| * [[INCLAN: timing|timing]]
| |
| * [[INCLAN: type|type]]
| |
| * [[INCLAN: var|var]]
| |
| </div>
| |
| | |
| == INCLAN Graphics ==
| |
| | |
| <div style="column-count:4;-moz-column-count:4;-webkit-column-count:4">
| |
| * [[INCLAN Graphics: plot arc|plot arc]]
| |
| * [[INCLAN Graphics: plot caro, plot cross, plot dot, plot plus, plot square, plot triangle|plot caro, plot cross, plot dot, plot plus, plot square, plot triangle]]
| |
| * [[INCLAN Graphics: plot clip|plot clip]]
| |
| * [[INCLAN Graphics: plot close|plot close]]
| |
| * [[INCLAN Graphics: plot comment|plot comment]]
| |
| * [[INCLAN Graphics: plot curve|plot curve]]
| |
| * [[INCLAN Graphics: plot errorbar|plot errorbar]]
| |
| * [[INCLAN Graphics: plot file|plot file]]
| |
| * [[INCLAN Graphics: plot fit|plot fit]]
| |
| * [[INCLAN Graphics: plot frame|plot frame]]
| |
| * [[INCLAN Graphics: plot function|plot function]]
| |
| * [[INCLAN Graphics: plot label|plot label]]
| |
| * [[INCLAN Graphics: plot line|plot line]]
| |
| * [[INCLAN Graphics: plot mif, plot ps|plot mif, plot ps]]
| |
| * [[INCLAN Graphics: plot polygon|plot polygon]]
| |
| * [[INCLAN Graphics: plot rectangle|plot rectangle]]
| |
| * [[INCLAN Graphics: plot scale|plot scale]]
| |
| * [[INCLAN Graphics: plot set|plot set]]
| |
| * [[INCLAN Graphics: plot shape|plot shape]]
| |
| * [[INCLAN Graphics: plot spline|plot spline]]
| |
| * [[INCLAN Graphics: plot text|plot text]]
| |
| * [[INCLAN Graphics: plot write|plot write]]
| |
| </div>
| |
|
| |
|
| == CYANA Scripts == | | == CYANA Scripts == |
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| == CYANA Commands == | | == CYANA Commands == |
|
| |
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| <div style="column-count:4;-moz-column-count:4;-webkit-column-count:4">
| | * [[CYANA Commands]] (complete list) |
| * [[CYANA Command: angles count|angles count]] | | |
| * [[CYANA Command: angles delete|angles delete]]
| | == CYANA Functions == |
| * [[CYANA Command: angles flip|angles flip]]
| | |
| * [[CYANA Command: angles ramachandran|angles ramachandran]]
| | * [[CYANA functions]] (complete list) |
| * [[CYANA Command: angles select|angles select]]
| | |
| * [[CYANA Command: angles set|angles set]]
| | == CYANA Variables == |
| * [[CYANA Command: angles split|angles split]]
| | |
| * [[CYANA Command: angstat clear|angstat clear]] | | * [[CYANA variables]] (complete list) |
| * [[CYANA Command: angstat list|angstat list]]
| | |
| * [[CYANA Command: angstat make|angstat make]]
| | == Selections == |
| * [[CYANA Command: assign|assign]]
| | |
| * [[CYANA Command: atoms attach|atoms attach]]
| | <div style="column-count:2;-moz-column-count:2;-webkit-column-count:2"> |
| * [[CYANA Command: atoms calibrate|atoms calibrate]] | | * [[Selection rules]] |
| * [[CYANA Command: atoms count|atoms count]]
| | </div> |
| * [[CYANA Command: atoms glomsa|atoms glomsa]]
| | |
| * [[CYANA Command: atoms list|atoms list]]
| | <div style="column-count:2;-moz-column-count:2;-webkit-column-count:2"> |
| * [[CYANA Command: atoms observable|atoms observable]]
| | * [[Atom selection]] |
| * [[CYANA Command: atoms select|atoms select]]
| | * [[Angle selection]] |
| * [[CYANA Command: atoms set|atoms set]]
| | * [[Peak selection]] |
| * [[CYANA Command: atoms stereo|atoms stereo]]
| | * [[Distance restraint selection]] |
| * [[CYANA Command: atoms swap|atoms swap]]
| | * [[Scalar coupling selection]] |
| * [[CYANA Command: calibrate|calibrate]]
| | * [[Residual dipolar coupling selection]] |
| * [[CYANA Command: couplings count|couplings count]]
| | * [[Pseudocontact shift selection]] |
| * [[CYANA Command: couplings delete|couplings delete]]
| | * [[Structure selection]] |
| * [[CYANA Command: couplings make|couplings make]]
| |
| * [[CYANA Command: couplings select|couplings select]]
| |
| * [[CYANA Command: couplings set|couplings set]]
| |
| * [[CYANA Command: distances calculate|distances calculate]]
| |
| * [[CYANA Command: distances check|distances check]]
| |
| * [[CYANA Command: distances combine|distances combine]]
| |
| * [[CYANA Command: distances compare|distances compare]]
| |
| * [[CYANA Command: distances correct|distances correct]]
| |
| * [[CYANA Command: distances count|distances count]]
| |
| * [[CYANA Command: distances delete|distances delete]]
| |
| * [[CYANA Command: distances expand|distances expand]] | |
| * [[CYANA Command: distances falsify|distances falsify]]
| |
| * [[CYANA Command: distances hbond|distances hbond]]
| |
| * [[CYANA Command: distances make|distances make]]
| |
| * [[CYANA Command: distances modify|distances modify]]
| |
| * [[CYANA Command: distances multiple|distances multiple]]
| |
| * [[CYANA Command: distances select|distances select]]
| |
| * [[CYANA Command: distances set|distances set]]
| |
| * [[CYANA Command: distances short|distances short]]
| |
| * [[CYANA Command: distances split|distances split]]
| |
| * [[CYANA Command: distances stat|distances stat]]
| |
| * [[CYANA Command: distances stereoexpand|distances stereoexpand]]
| |
| * [[CYANA Command: distances unique|distances unique]]
| |
| * [[CYANA Command: distances vdw|distances vdw]]
| |
| * [[CYANA Command: gradient|gradient]]
| |
| * [[CYANA Command: grid aco|grid aco]]
| |
| * [[CYANA Command: grid correlate|grid correlate]]
| |
| * [[CYANA Command: grid fragment|grid fragment]]
| |
| * [[CYANA Command: grid memory|grid memory]]
| |
| * [[CYANA Command: grid search|grid search]]
| |
| * [[CYANA Command: grid swap|grid swap]]
| |
| * [[CYANA Command: library check|library check]]
| |
| * [[CYANA Command: library mirror|library mirror]]
| |
| * [[CYANA Command: library new|library new]]
| |
| * [[CYANA Command: library remove|library remove]]
| |
| * [[CYANA Command: library rename|library rename]]
| |
| * [[CYANA Command: library replace|library replace]]
| |
| * [[CYANA Command: md|md]]
| |
| * [[CYANA Command: minimize|minimize]]
| |
| * [[CYANA Command: molecules define|molecules define]]
| |
| * [[CYANA Command: molecules identity|molecules identity]]
| |
| * [[CYANA Command: molecules symdist|molecules symdist]]
| |
| * [[CYANA Command: pcs axial|pcs axial]]
| |
| * [[CYANA Command: pcs count|pcs count]]
| |
| * [[CYANA Command: pcs delete|pcs delete]]
| |
| * [[CYANA Command: pcs list|pcs list]]
| |
| * [[CYANA Command: pcs make|pcs make]]
| |
| * [[CYANA Command: pcs rhombic|pcs rhombic]]
| |
| * [[CYANA Command: pcs select|pcs select]]
| |
| * [[CYANA Command: pcs set|pcs set]]
| |
| * [[CYANA Command: peaks backcal|peaks backcal]]
| |
| * [[CYANA Command: peaks calibrate|peaks calibrate]]
| |
| * [[CYANA Command: peaks count|peaks count]]
| |
| * [[CYANA Command: peaks create|peaks create]]
| |
| * [[CYANA Command: peaks delete|peaks delete]]
| |
| * [[CYANA Command: peaks deviations|peaks deviations]]
| |
| * [[CYANA Command: peaks distance|peaks distance]]
| |
| * [[CYANA Command: peaks filter|peaks filter]]
| |
| * [[CYANA Command: peaks fit|peaks fit]]
| |
| * [[CYANA Command: peaks protonize|peaks protonize]]
| |
| * [[CYANA Command: peaks select|peaks select]]
| |
| * [[CYANA Command: peaks set|peaks set]]
| |
| * [[CYANA Command: peaks simplecal|peaks simplecal]]
| |
| * [[CYANA Command: peaks split|peaks split]]
| |
| * [[CYANA Command: peaks unassign|peaks unassign]]
| |
| * [[CYANA Command: peaks unique|peaks unique]]
| |
| * [[CYANA Command: randomize|randomize]]
| |
| * [[CYANA Command: rdc count|rdc count]]
| |
| * [[CYANA Command: rdc delete|rdc delete]]
| |
| * [[CYANA Command: rdc distance|rdc distance]]
| |
| * [[CYANA Command: rdc fittensor|rdc fittensor]]
| |
| * [[CYANA Command: rdc list|rdc list]]
| |
| * [[CYANA Command: rdc make|rdc make]]
| |
| * [[CYANA Command: rdc select|rdc select]]
| |
| * [[CYANA Command: rdc set|rdc set]]
| |
| * [[CYANA Command: rdc tensor|rdc tensor]]
| |
| * [[CYANA Command: read aco|read aco]]
| |
| * [[CYANA Command: read ang|read ang]]
| |
| * [[CYANA Command: read bmrb|read bmrb]]
| |
| * [[CYANA Command: read cco|read cco]]
| |
| * [[CYANA Command: read cor|read cor]]
| |
| * [[CYANA Command: read lib|read lib]]
| |
| * [[CYANA Command: read lol|read lol]]
| |
| * [[CYANA Command: read nmrview|read nmrview]]
| |
| * [[CYANA Command: read pcs|read pcs]]
| |
| * [[CYANA Command: read pdb|read pdb]]
| |
| * [[CYANA Command: read peaks|read peaks]]
| |
| * [[CYANA Command: read prot|read prot]]
| |
| * [[CYANA Command: read rdc|read rdc]]
| |
| * [[CYANA Command: read upl|read upl]]
| |
| * [[CYANA Command: read xpk|read xpk]]
| |
| * [[CYANA Command: read xplor|read xplor]]
| |
| * [[CYANA Command: shifts adapt|shifts adapt]]
| |
| * [[CYANA Command: shifts assign|shifts assign]]
| |
| * [[CYANA Command: shifts check|shifts check]]
| |
| * [[CYANA Command: shifts collapse|shifts collapse]]
| |
| * [[CYANA Command: shifts consolidate|shifts consolidate]]
| |
| * [[CYANA Command: shifts converge|shifts converge]]
| |
| * [[CYANA Command: shifts d2o|shifts d2o]]
| |
| * [[CYANA Command: shifts incomplete|shifts incomplete]]
| |
| * [[CYANA Command: shifts initialize|shifts initialize]]
| |
| * [[CYANA Command: shifts missing|shifts missing]]
| |
| * [[CYANA Command: shifts randomcoil|shifts randomcoil]]
| |
| * [[CYANA Command: shifts renumber|shifts renumber]]
| |
| * [[CYANA Command: shifts unusual|shifts unusual]]
| |
| * [[CYANA Command: structures clear|structures clear]]
| |
| * [[CYANA Command: structures copy|structures copy]]
| |
| * [[CYANA Command: structures hbonds|structures hbonds]]
| |
| * [[CYANA Command: structures insert|structures insert]]
| |
| * [[CYANA Command: structures list|structures list]]
| |
| * [[CYANA Command: structures mean|structures mean]]
| |
| * [[CYANA Command: structures overlay|structures overlay]]
| |
| * [[CYANA Command: structures secondary|structures secondary]]
| |
| * [[CYANA Command: structures select|structures select]]
| |
| * [[CYANA Command: structures sort|structures sort]]
| |
| * [[CYANA Command: structures swap|structures swap]]
| |
| * [[CYANA Command: structures violate|structures violate]]
| |
| * [[CYANA Command: write aco|write aco]]
| |
| * [[CYANA Command: write ang|write ang]]
| |
| * [[CYANA Command: write assign|write assign]]
| |
| * [[CYANA Command: write bmrb|write bmrb]] | |
| * [[CYANA Command: write cco|write cco]] | |
| * [[CYANA Command: write cor|write cor]] | |
| * [[CYANA Command: write lib|write lib]] | |
| * [[CYANA Command: write lol|write lol]] | |
| * [[CYANA Command: write pcs|write pcs]] | |
| * [[CYANA Command: write pdb|write pdb]] | |
| * [[CYANA Command: write peaks|write peaks]] | |
| * [[CYANA Command: write prot|write prot]]
| |
| * [[CYANA Command: write rdc|write rdc]]
| |
| * [[CYANA Command: write seq|write seq]]
| |
| * [[CYANA Command: write upl|write upl]]
| |
| * [[CYANA Command: write xpk|write xpk]]
| |
| </div> | | </div> |
|
| |
|
| == CYANA Macros == | | == Input files == |
|
| |
|
| <div style="column-count:4;-moz-column-count:4;-webkit-column-count:4"> | | <div style="column-count:2;-moz-column-count:2;-webkit-column-count:2"> |
| * [[CYANA Macro: anneal|anneal]] | | * [[Residue library file]] (.lib) |
| * [[CYANA Macro: calc_all|calc_all]] | | * [[Sequence file]] (.seq) |
| * [[CYANA Macro: caliba|caliba]] | | * [[Distance restraint file]] (.upl, .lol) |
| * [[CYANA Macro: calibration|calibration]] | | * [[Torsion angle restraint file]] (.aco) |
| * [[CYANA Macro: cashiftaco|cashiftaco]] | | * [[Residual dipolar coupling restraint file]] (.rdc) |
| * [[CYANA Macro: cashiftplot|cashiftplot]] | | * [[Pseudocontact shift restraint file]] (.pcs) |
| * [[CYANA Macro: cisprocheck|cisprocheck]] | | * [[DG Cartesian coordinate file]] (.cor) |
| * [[CYANA Macro: coco|coco]] | | * [[PDB coordinate file]] (.pdb) |
| * [[CYANA Macro: cyscheck|cyscheck]] | | * [[Torsion angle file]] (.ang) |
| * [[CYANA Macro: dcostat|dcostat]] | | * [[XEASY chemical shift list file]] (.prot) |
| * [[CYANA Macro: dcotab|dcotab]] | | * [[BMRB chemical shift list file]] (.bmrb) |
| * [[CYANA Macro: deposit|deposit]] | | * [[XEASY peak list file]] (.peaks) |
| * [[CYANA Macro: dinucleotide|dinucleotide]] | | * [[NMRView peak list file]] (.xpk) |
| * [[CYANA Macro: flip|flip]] | | * [[auto-relaxation and I(0) values]] (.rho) |
| * [[CYANA Macro: forall|forall]]
| |
| * [[CYANA Macro: garant|garant]]
| |
| * [[CYANA Macro: graf|graf]]
| |
| * [[CYANA Macro: gridplot|gridplot]]
| |
| * [[CYANA Macro: habas|habas]]
| |
| * [[CYANA Macro: hbond|hbond]]
| |
| * [[CYANA Macro: init|init]]
| |
| * [[CYANA Macro: initsafe|initsafe]]
| |
| * [[CYANA Macro: karplus|karplus]]
| |
| * [[CYANA Macro: kringle|kringle]]
| |
| * [[CYANA Macro: longrangeplot|longrangeplot]]
| |
| * [[CYANA Macro: loop|loop]]
| |
| * [[CYANA Macro: makeaco|makeaco]]
| |
| * [[CYANA Macro: noeassign|noeassign]]
| |
| * [[CYANA Macro: onelettercode|onelettercode]]
| |
| * [[CYANA Macro: opalprefine|opalprefine]]
| |
| * [[CYANA Macro: overlay|overlay]]
| |
| * [[CYANA Macro: overview|overview]]
| |
| * [[CYANA Macro: peakcheck|peakcheck]]
| |
| * [[CYANA Macro: prolinebond|prolinebond]]
| |
| * [[CYANA Macro: ramaaco|ramaaco]]
| |
| * [[CYANA Macro: ramaplot|ramaplot]]
| |
| * [[CYANA Macro: random_all|random_all]]
| |
| * [[CYANA Macro: rdcdistances|rdcdistances]]
| |
| * [[CYANA Macro: read_all|read_all]]
| |
| * [[CYANA Macro: readdata|readdata]]
| |
| * [[CYANA Macro: redac|redac]]
| |
| * [[CYANA Macro: renumber|renumber]]
| |
| * [[CYANA Macro: rmsd|rmsd]]
| |
| * [[CYANA Macro: rotameraco|rotameraco]]
| |
| * [[CYANA Macro: savestereo|savestereo]]
| |
| * [[CYANA Macro: seqplot|seqplot]]
| |
| * [[CYANA Macro: ssbond|ssbond]]
| |
| * [[CYANA Macro: stereoassign|stereoassign]]
| |
| * [[CYANA Macro: structcalc|structcalc]]
| |
| * [[CYANA Macro: sugarbond|sugarbond]]
| |
| * [[CYANA Macro: sugarring|sugarring]]
| |
| * [[CYANA Macro: syscheck|syscheck]]
| |
| * [[CYANA Macro: talosaco|talosaco]]
| |
| * [[CYANA Macro: taloslist|taloslist]]
| |
| * [[CYANA Macro: threelettercode|threelettercode]]
| |
| * [[CYANA Macro: translate|translate]]
| |
| * [[CYANA Macro: vtfmin|vtfmin]]
| |
| * [[CYANA Macro: watsoncrick|watsoncrick]]
| |
| * [[CYANA Macro: write_all|write_all]]
| |
| </div> | | </div> |
|
| |
|
| == CYANA Functions == | | == Nomenclature == |
|
| |
|
| <div style="column-count:6;-moz-column-count:6;-webkit-column-count:6">
| | * [[Standard CYANA nomenclature|Standard nomenclature for amino acids and nucleotides]] |
| * [[CYANA Function: acoviol|acoviol]] | |
| * [[CYANA Function: anam|anam]]
| |
| * [[CYANA Function: anamlib|anamlib]]
| |
| * [[CYANA Function: angle|angle]]
| |
| * [[CYANA Function: anglelong|anglelong]]
| |
| * [[CYANA Function: atom|atom]]
| |
| * [[CYANA Function: atomlong|atomlong]]
| |
| * [[CYANA Function: bondangle|bondangle]]
| |
| * [[CYANA Function: calconst|calconst]]
| |
| * [[CYANA Function: calscale|calscale]]
| |
| * [[CYANA Function: cco|cco]]
| |
| * [[CYANA Function: coord|coord]]
| |
| * [[CYANA Function: cstab|cstab]]
| |
| * [[CYANA Function: cyanadir|cyanadir]]
| |
| * [[CYANA Function: dcosel|dcosel]]
| |
| * [[CYANA Function: derms|derms]]
| |
| * [[CYANA Function: diastereotopic|diastereotopic]]
| |
| * [[CYANA Function: dist|dist]]
| |
| * [[CYANA Function: dmax|dmax]]
| |
| * [[CYANA Function: dmean|dmean]]
| |
| * [[CYANA Function: dnam|dnam]]
| |
| * [[CYANA Function: dnamlib|dnamlib]]
| |
| * [[CYANA Function: drms|drms]]
| |
| * [[CYANA Function: dshift|dshift]]
| |
| * [[CYANA Function: dstddev|dstddev]]
| |
| * [[CYANA Function: dval|dval]]
| |
| * [[CYANA Function: ekin|ekin]]
| |
| * [[CYANA Function: ekmean|ekmean]]
| |
| * [[CYANA Function: ekrms|ekrms]]
| |
| * [[CYANA Function: element|element]]
| |
| * [[CYANA Function: emean|emean]]
| |
| * [[CYANA Function: erms|erms]]
| |
| * [[CYANA Function: functions|functions]]
| |
| * [[CYANA Function: heavyatom|heavyatom]]
| |
| * [[CYANA Function: iacod|iacod]]
| |
| * [[CYANA Function: iar|iar]]
| |
| * [[CYANA Function: iaunit|iaunit]]
| |
| * [[CYANA Function: ibond|ibond]]
| |
| * [[CYANA Function: iccoa|iccoa]]
| |
| * [[CYANA Function: ida|ida]]
| |
| * [[CYANA Function: idcoa|idcoa]]
| |
| * [[CYANA Function: idord|idord]]
| |
| * [[CYANA Function: idr|idr]]
| |
| * [[CYANA Function: ifira|ifira]]
| |
| * [[CYANA Function: ifird|ifird]]
| |
| * [[CYANA Function: indco|indco]]
| |
| * [[CYANA Function: inpk|inpk]]
| |
| * [[CYANA Function: interval|interval]]
| |
| * [[CYANA Function: intervals|intervals]]
| |
| * [[CYANA Function: ipa|ipa]]
| |
| * [[CYANA Function: ipel|ipel]]
| |
| * [[CYANA Function: iprev|iprev]]
| |
| * [[CYANA Function: irnum|irnum]]
| |
| * [[CYANA Function: istruct|istruct]]
| |
| * [[CYANA Function: lda|lda]]
| |
| * [[CYANA Function: libdir|libdir]]
| |
| * [[CYANA Function: magnitude|magnitude]]
| |
| * [[CYANA Function: matchangle|matchangle]]
| |
| * [[CYANA Function: matchatom|matchatom]]
| |
| * [[CYANA Function: naa|naa]]
| |
| * [[CYANA Function: naco|naco]]
| |
| * [[CYANA Function: na|na]]
| |
| * [[CYANA Function: narmsd|narmsd]]
| |
| * [[CYANA Function: nassign|nassign]]
| |
| * [[CYANA Function: nbond|nbond]]
| |
| * [[CYANA Function: ncco|ncco]]
| |
| * [[CYANA Function: nconf|nconf]]
| |
| * [[CYANA Function: ndcdis|ndcdis]]
| |
| * [[CYANA Function: ndco|ndco]]
| |
| * [[CYANA Function: ndcres|ndcres]]
| |
| * [[CYANA Function: nd|nd]]
| |
| * [[CYANA Function: ndfree|ndfree]]
| |
| * [[CYANA Function: ndim|ndim]]
| |
| * [[CYANA Function: nlevel|nlevel]]
| |
| * [[CYANA Function: nlol|nlol]]
| |
| * [[CYANA Function: nmol|nmol]]
| |
| * [[CYANA Function: npeaks|npeaks]]
| |
| * [[CYANA Function: npkl|npkl]]
| |
| * [[CYANA Function: nr|nr]]
| |
| * [[CYANA Function: nsel|nsel]]
| |
| * [[CYANA Function: nseldis|nseldis]]
| |
| * [[CYANA Function: nshifts|nshifts]]
| |
| * [[CYANA Function: nstructall|nstructall]]
| |
| * [[CYANA Function: nstruct|nstruct]]
| |
| * [[CYANA Function: numpro|numpro]]
| |
| * [[CYANA Function: nupl|nupl]]
| |
| * [[CYANA Function: orientations|orientations]]
| |
| * [[CYANA Function: pi|pi]]
| |
| * [[CYANA Function: pseudoatom|pseudoatom]]
| |
| * [[CYANA Function: rad|rad]]
| |
| * [[CYANA Function: rhombicity|rhombicity]]
| |
| * [[CYANA Function: rid|rid]]
| |
| * [[CYANA Function: rmsdcurr|rmsdcurr]]
| |
| * [[CYANA Function: rmsdmax|rmsdmax]]
| |
| * [[CYANA Function: rmsdmean|rmsdmean]]
| |
| * [[CYANA Function: rmsdmin|rmsdmin]]
| |
| * [[CYANA Function: rmsdpair|rmsdpair]]
| |
| * [[CYANA Function: rmsdstd|rmsdstd]]
| |
| * [[CYANA Function: rnam|rnam]]
| |
| * [[CYANA Function: rnamlib|rnamlib]]
| |
| * [[CYANA Function: rnum|rnum]]
| |
| * [[CYANA Function: seldis|seldis]]
| |
| * [[CYANA Function: selected|selected]]
| |
| * [[CYANA Function: selrange|selrange]]
| |
| * [[CYANA Function: selrangeshort|selrangeshort]]
| |
| * [[CYANA Function: shift|shift]]
| |
| * [[CYANA Function: stereopartner|stereopartner]]
| |
| * [[CYANA Function: tfcalc|tfcalc]]
| |
| * [[CYANA Function: tf|tf]]
| |
| * [[CYANA Function: tfmax|tfmax]]
| |
| * [[CYANA Function: tfmin|tfmin]]
| |
| * [[CYANA Function: tfres|tfres]]
| |
| * [[CYANA Function: timestep|timestep]]
| |
| * [[CYANA Function: tolcco|tolcco]]
| |
| * [[CYANA Function: tor|tor]]
| |
| </div>
| |
|
| |
|
| == CYANA Variables == | | == Algorithms == |
|
| |
|
| <div style="column-count:6;-moz-column-count:6;-webkit-column-count:6"> | | <div style="column-count:2;-moz-column-count:2;-webkit-column-count:2"> |
| * [[CYANA Variable: aco_type|aco_type]] | | * [[Coordinate generation]] |
| * [[CYANA Variable: combine_oi|combine_oi]]
| | * [[Target function]] |
| * [[CYANA Variable: corr14|corr14]]
| | * [[Torsion angle dynamics]] |
| * [[CYANA Variable: cross_oi_rdc|cross_oi_rdc]]
| | * [[Momenta compensation]] |
| * [[CYANA Variable: cut_aco|cut_aco]]
| | * [[Simulated annealing]] |
| * [[CYANA Variable: cut_cco|cut_cco]]
| |
| * [[CYANA Variable: cut_lol|cut_lol]]
| |
| * [[CYANA Variable: cut_pcs|cut_pcs]]
| |
| * [[CYANA Variable: cut_rdc|cut_rdc]]
| |
| * [[CYANA Variable: cut_tflocal|cut_tflocal]]
| |
| * [[CYANA Variable: cut_upl|cut_upl]]
| |
| * [[CYANA Variable: cut_vdw|cut_vdw]]
| |
| * [[CYANA Variable: expand|expand]]
| |
| * [[CYANA Variable: gridpoints|gridpoints]]
| |
| * [[CYANA Variable: gridtime|gridtime]]
| |
| * [[CYANA Variable: hb_ang|hb_ang]]
| |
| * [[CYANA Variable: hb_len|hb_len]]
| |
| * [[CYANA Variable: level|level]]
| |
| * [[CYANA Variable: nstep|nstep]]
| |
| * [[CYANA Variable: obsdis|obsdis]]
| |
| * [[CYANA Variable: oie_k1|oie_k1]]
| |
| * [[CYANA Variable: oie_k2|oie_k2]]
| |
| * [[CYANA Variable: oi_k1|oi_k1]]
| |
| * [[CYANA Variable: oi_k2|oi_k2]]
| |
| * [[CYANA Variable: oip_end|oip_end]]
| |
| * [[CYANA Variable: oip_max|oip_max]]
| |
| * [[CYANA Variable: oip_min|oip_min]]
| |
| * [[CYANA Variable: oip_scaling|oip_scaling]]
| |
| * [[CYANA Variable: oip_start|oip_start]]
| |
| * [[CYANA Variable: ois_k1|ois_k1]]
| |
| * [[CYANA Variable: ois_k2|ois_k2]]
| |
| * [[CYANA Variable: opt_tensor_count|opt_tensor_count]]
| |
| * [[CYANA Variable: opt_tensor|opt_tensor]]
| |
| * [[CYANA Variable: opt_tensor_start|opt_tensor_start]]
| |
| * [[CYANA Variable: opt_tensor_treshold|opt_tensor_treshold]]
| |
| * [[CYANA Variable: pcs_end_k1|pcs_end_k1]]
| |
| * [[CYANA Variable: pcs_start_k1|pcs_start_k1]]
| |
| * [[CYANA Variable: pcs_ws_on|pcs_ws_on]]
| |
| * [[CYANA Variable: positive_gyros|positive_gyros]]
| |
| * [[CYANA Variable: pseudo|pseudo]]
| |
| * [[CYANA Variable: rdc_potential|rdc_potential]]
| |
| * [[CYANA Variable: rdc_vas1_on|rdc_vas1_on]]
| |
| * [[CYANA Variable: rdc_vas2_on|rdc_vas2_on]] | |
| * [[CYANA Variable: rdc_vts_on|rdc_vts_on]] | |
| * [[CYANA Variable: seed|seed]] | |
| * [[CYANA Variable: soft_aco|soft_aco]] | |
| * [[CYANA Variable: soft_cco|soft_cco]]
| |
| * [[CYANA Variable: soft_lol|soft_lol]]
| |
| * [[CYANA Variable: soft_upl|soft_upl]]
| |
| * [[CYANA Variable: soft_vdw|soft_vdw]]
| |
| * [[CYANA Variable: swap|swap]]
| |
| * [[CYANA Variable: tf_asymptote|tf_asymptote]]
| |
| * [[CYANA Variable: tf_offset|tf_offset]]
| |
| * [[CYANA Variable: tf_type|tf_type]]
| |
| * [[CYANA Variable: tolerance|tolerance]]
| |
| * [[CYANA Variable: tolpeak|tolpeak]]
| |
| * [[CYANA Variable: trad_end_k1|trad_end_k1]]
| |
| * [[CYANA Variable: trad_start_k1|trad_start_k1]]
| |
| * [[CYANA Variable: upl_values|upl_values]]
| |
| * [[CYANA Variable: use_svd|use_svd]]
| |
| * [[CYANA Variable: variables|variables]]
| |
| * [[CYANA Variable: vdw_power|vdw_power]]
| |
| * [[CYANA Variable: viocap|viocap]]
| |
| * [[CYANA Variable: weight_aco|weight_aco]]
| |
| * [[CYANA Variable: weight_cco|weight_cco]]
| |
| * [[CYANA Variable: weight_ide|weight_ide]]
| |
| * [[CYANA Variable: weight_lol|weight_lol]]
| |
| * [[CYANA Variable: weight_pcs|weight_pcs]]
| |
| * [[CYANA Variable: weight_rdc|weight_rdc]]
| |
| * [[CYANA Variable: weight_sym|weight_sym]]
| |
| * [[CYANA Variable: weight_upl|weight_upl]]
| |
| * [[CYANA Variable: weight_vdw|weight_vdw]]
| |
| </div> | | </div> |