CYANA 3.0 Reference Manual: Difference between revisions
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== INCLAN == | __NOTOC__ | ||
== INCLAN (INteractive Command LANguage) == | |||
* [[INCLAN Reference Manual]] | |||
== CYANA Scripts == | |||
<div style="column-count:4;-moz-column-count:4;-webkit-column-count:4"> | <div style="column-count:4;-moz-column-count:4;-webkit-column-count:4"> | ||
* [[ | * [[CYANA script: cyanaclean|cyanaclean]] | ||
* [[ | * [[CYANA script: cyana|cyana]] | ||
* [[ | * [[CYANA script: cyanafilter|cyanafilter]] | ||
* [[ | * [[CYANA script: cyanajob|cyanajob]] | ||
* [[ | * [[CYANA script: cyanatable|cyanatable]] | ||
</div> | </div> | ||
== | == CYANA Commands == | ||
* [[CYANA Commands]] (complete list) | |||
== CYANA Functions == | |||
* [[ | * [[CYANA functions]] (complete list) | ||
== CYANA Variables == | |||
* [[CYANA variables]] (complete list) | |||
* [[ | |||
== | == Selections == | ||
<div style="column-count: | <div style="column-count:2;-moz-column-count:2;-webkit-column-count:2"> | ||
* [[ | * [[Selection rules]] | ||
</div> | </div> | ||
<div style="column-count:2;-moz-column-count:2;-webkit-column-count:2"> | |||
* [[Atom selection]] | |||
<div style="column-count: | * [[Angle selection]] | ||
* [[ | * [[Peak selection]] | ||
* [[Distance restraint selection]] | |||
* [[Scalar coupling selection]] | |||
* [[Residual dipolar coupling selection]] | |||
* [[Pseudocontact shift selection]] | |||
* [[Structure selection]] | |||
* [[ | |||
* [[ | |||
* [[ | |||
* [[ | |||
* [[ | |||
* [[ | |||
* [[ | |||
</div> | </div> | ||
== Input files == | |||
<div style="column-count: | <div style="column-count:2;-moz-column-count:2;-webkit-column-count:2"> | ||
* [[]] | * [[Residue library file]] (.lib) | ||
* [[Sequence file]] (.seq) | |||
* [[Distance restraint file]] (.upl, .lol) | |||
* [[Torsion angle restraint file]] (.aco) | |||
* [[Residual dipolar coupling restraint file]] (.rdc) | |||
* [[Pseudocontact shift restraint file]] (.pcs) | |||
* [[DG Cartesian coordinate file]] (.cor) | |||
* [[PDB coordinate file]] (.pdb) | |||
* [[Torsion angle file]] (.ang) | |||
* [[XEASY chemical shift list file]] (.prot) | |||
* [[BMRB chemical shift list file]] (.bmrb) | |||
* [[XEASY peak list file]] (.peaks) | |||
* [[NMRView peak list file]] (.xpk) | |||
* [[auto-relaxation and I(0) values]] (.rho) | |||
</div> | </div> | ||
== | == Nomenclature == | ||
* [[Standard CYANA nomenclature|Standard nomenclature for amino acids and nucleotides]] | |||
* [[ | |||
== | == Algorithms == | ||
<div style="column-count: | <div style="column-count:2;-moz-column-count:2;-webkit-column-count:2"> | ||
* [[ | * [[Coordinate generation]] | ||
* [[ | * [[Target function]] | ||
* [[ | * [[Torsion angle dynamics]] | ||
* [[ | * [[Momenta compensation]] | ||
* [[ | * [[Simulated annealing]] | ||
</div> | </div> | ||
Latest revision as of 13:22, 17 January 2019
INCLAN (INteractive Command LANguage)
CYANA Scripts
CYANA Commands
- CYANA Commands (complete list)
CYANA Functions
- CYANA functions (complete list)
CYANA Variables
- CYANA variables (complete list)
Selections
Input files
- Residue library file (.lib)
- Sequence file (.seq)
- Distance restraint file (.upl, .lol)
- Torsion angle restraint file (.aco)
- Residual dipolar coupling restraint file (.rdc)
- Pseudocontact shift restraint file (.pcs)
- DG Cartesian coordinate file (.cor)
- PDB coordinate file (.pdb)
- Torsion angle file (.ang)
- XEASY chemical shift list file (.prot)
- BMRB chemical shift list file (.bmrb)
- XEASY peak list file (.peaks)
- NMRView peak list file (.xpk)
- auto-relaxation and I(0) values (.rho)