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  1. ATNOS
  2. AUTOPSY
  3. Aco type
  4. Alias
  5. Anam
  6. Anamlib
  7. Angle
  8. Angle selection
  9. Anglelong
  10. Angles count
  11. Angles delete
  12. Angles flip
  13. Angles ramachandran
  14. Angles select
  15. Angles set
  16. Angles split
  17. Angstat clear
  18. Angstat list
  19. Angstat make
  20. Anneal
  21. Ask
  22. Assign
  23. Atom
  24. Atom selection
  25. Atomlong
  26. Atoms attach
  27. Atoms calibrate
  28. Atoms count
  29. Atoms glomsa
  30. Atoms list
  31. Atoms observable
  32. Atoms select
  33. Atoms set
  34. Atoms stereo
  35. Atoms swap
  36. Auto-relaxation and I(0) values
  37. Automated NMR protein structure calculation with CYANA
  38. Automated calculation of a protein-ligand complex structure (AUREMN, Brazil 2018)
  39. Automated resonance assignment with FLYA (EGothenburg 2021)
  40. Automated resonance assignment with FLYA (EMBO 2013)
  41. Automated resonance assignment with FLYA (EMBO 2015)
  42. Automated resonance assignment with FLYA (EMBO 2017)
  43. Automated resonance assignment with FLYA (EMBO 2019)
  44. Automated resonance assignment with FLYA (Gothenburg 2014)
  45. Automated resonance assignment with FLYA (Gothenburg 2021)
  46. BMRB chemical shift list file
  47. Basic structure calculation starting from given restraints
  48. Benchmarks
  49. Bondangle
  50. Break
  51. Break, exit, quit, return
  52. CANDID
  53. COCO
  54. CYANA 3.0 Reference Manual
  55. CYANA Command: angles count
  56. CYANA Command: angles delete
  57. CYANA Command: angles fix
  58. CYANA Command: angles flip
  59. CYANA Command: angles free
  60. CYANA Command: angles ramachandran
  61. CYANA Command: angles select
  62. CYANA Command: angles set
  63. CYANA Command: angles split
  64. CYANA Command: angstat clear
  65. CYANA Command: angstat list
  66. CYANA Command: angstat make
  67. CYANA Command: anneal
  68. CYANA Command: assign
  69. CYANA Command: atoms attach
  70. CYANA Command: atoms calibrate
  71. CYANA Command: atoms count
  72. CYANA Command: atoms glomsa
  73. CYANA Command: atoms list
  74. CYANA Command: atoms observable
  75. CYANA Command: atoms select
  76. CYANA Command: atoms set
  77. CYANA Command: atoms set protlev
  78. CYANA Command: atoms shifts
  79. CYANA Command: atoms stereo
  80. CYANA Command: atoms swap
  81. CYANA Command: atoms values
  82. CYANA Command: calibrate
  83. CYANA Command: couplings count
  84. CYANA Command: couplings delete
  85. CYANA Command: couplings make
  86. CYANA Command: couplings select
  87. CYANA Command: couplings set
  88. CYANA Command: distances calculate
  89. CYANA Command: distances check
  90. CYANA Command: distances combine
  91. CYANA Command: distances compare
  92. CYANA Command: distances correct
  93. CYANA Command: distances count
  94. CYANA Command: distances delete
  95. CYANA Command: distances expand
  96. CYANA Command: distances falsify
  97. CYANA Command: distances hbond
  98. CYANA Command: distances make
  99. CYANA Command: distances modify
  100. CYANA Command: distances multiple
  101. CYANA Command: distances select
  102. CYANA Command: distances set
  103. CYANA Command: distances short
  104. CYANA Command: distances split
  105. CYANA Command: distances stat
  106. CYANA Command: distances stereoexpand
  107. CYANA Command: distances unique
  108. CYANA Command: distances vdw
  109. CYANA Command: enoe avgExpVal
  110. CYANA Command: enoe buildup
  111. CYANA Command: enoe cross
  112. CYANA Command: enoe decay
  113. CYANA Command: enoe diag
  114. CYANA Command: enoe init
  115. CYANA Command: enoe intensities
  116. CYANA Command: enoe overview
  117. CYANA Command: enoe plotbup
  118. CYANA Command: enoe plotdec
  119. CYANA Command: enoe reff
  120. CYANA Command: enoe restraint
  121. CYANA Command: enoe sig
  122. CYANA Command: enoe spdcorr
  123. CYANA Command: enoe spindiff
  124. CYANA Command: enoe twospin
  125. CYANA Command: enoe values
  126. CYANA Command: gradient
  127. CYANA Command: grid aco
  128. CYANA Command: grid correlate
  129. CYANA Command: grid fragment
  130. CYANA Command: grid memory
  131. CYANA Command: grid search
  132. CYANA Command: grid swap
  133. CYANA Command: library check
  134. CYANA Command: library mirror
  135. CYANA Command: library new
  136. CYANA Command: library remove
  137. CYANA Command: library rename
  138. CYANA Command: library replace
  139. CYANA Command: md
  140. CYANA Command: minimize
  141. CYANA Command: molecules define
  142. CYANA Command: molecules identity
  143. CYANA Command: molecules symdist
  144. CYANA Command: pcs axial
  145. CYANA Command: pcs count
  146. CYANA Command: pcs delete
  147. CYANA Command: pcs list
  148. CYANA Command: pcs make
  149. CYANA Command: pcs rhombic
  150. CYANA Command: pcs select
  151. CYANA Command: pcs set
  152. CYANA Command: peaks backcal
  153. CYANA Command: peaks calibrate
  154. CYANA Command: peaks count
  155. CYANA Command: peaks create
  156. CYANA Command: peaks delete
  157. CYANA Command: peaks deviations
  158. CYANA Command: peaks distance
  159. CYANA Command: peaks filter
  160. CYANA Command: peaks fit
  161. CYANA Command: peaks protonize
  162. CYANA Command: peaks select
  163. CYANA Command: peaks set
  164. CYANA Command: peaks simplecal
  165. CYANA Command: peaks split
  166. CYANA Command: peaks unassign
  167. CYANA Command: peaks unique
  168. CYANA Command: randomize
  169. CYANA Command: rdc count
  170. CYANA Command: rdc delete
  171. CYANA Command: rdc distance
  172. CYANA Command: rdc fittensor
  173. CYANA Command: rdc list
  174. CYANA Command: rdc make
  175. CYANA Command: rdc select
  176. CYANA Command: rdc set
  177. CYANA Command: rdc tensor
  178. CYANA Command: read aco
  179. CYANA Command: read ang
  180. CYANA Command: read bmrb
  181. CYANA Command: read cco
  182. CYANA Command: read cor
  183. CYANA Command: read lib
  184. CYANA Command: read lol
  185. CYANA Command: read nmrview
  186. CYANA Command: read pcs
  187. CYANA Command: read pdb
  188. CYANA Command: read peaks
  189. CYANA Command: read prot
  190. CYANA Command: read rdc
  191. CYANA Command: read rho
  192. CYANA Command: read tab
  193. CYANA Command: read upl
  194. CYANA Command: read xpk
  195. CYANA Command: read xplor
  196. CYANA Command: shifts adapt
  197. CYANA Command: shifts assign
  198. CYANA Command: shifts check
  199. CYANA Command: shifts collapse
  200. CYANA Command: shifts consolidate
  201. CYANA Command: shifts converge
  202. CYANA Command: shifts d2o
  203. CYANA Command: shifts incomplete
  204. CYANA Command: shifts initialize
  205. CYANA Command: shifts missing
  206. CYANA Command: shifts randomcoil
  207. CYANA Command: shifts renumber
  208. CYANA Command: shifts unusual
  209. CYANA Command: structures clear
  210. CYANA Command: structures copy
  211. CYANA Command: structures hbonds
  212. CYANA Command: structures insert
  213. CYANA Command: structures list
  214. CYANA Command: structures mean
  215. CYANA Command: structures overlay
  216. CYANA Command: structures secondary
  217. CYANA Command: structures select
  218. CYANA Command: structures sort
  219. CYANA Command: structures swap
  220. CYANA Command: structures violate
  221. CYANA Command: write aco
  222. CYANA Command: write ang
  223. CYANA Command: write assign
  224. CYANA Command: write bmrb
  225. CYANA Command: write cco
  226. CYANA Command: write cor
  227. CYANA Command: write lib
  228. CYANA Command: write lol
  229. CYANA Command: write pcs
  230. CYANA Command: write pdb
  231. CYANA Command: write peaks
  232. CYANA Command: write prot
  233. CYANA Command: write rdc
  234. CYANA Command: write rho
  235. CYANA Command: write seq
  236. CYANA Command: write sparky
  237. CYANA Command: write upl
  238. CYANA Command: write xpk
  239. CYANA Commands
  240. CYANA Commands:
  241. CYANA Commands: angles count
  242. CYANA Commands: angles delete
  243. CYANA Commands: angles flip
  244. CYANA Commands: angles ramachandran
  245. CYANA Commands: angles select
  246. CYANA Commands: angles set
  247. CYANA Commands: angles split
  248. CYANA Commands: angstat clear
  249. CYANA Commands: angstat list
  250. CYANA Commands: angstat make
  251. CYANA Commands: assign
  252. CYANA Commands: atoms attach
  253. CYANA Commands: atoms calibrate
  254. CYANA Commands: atoms count
  255. CYANA Commands: atoms glomsa
  256. CYANA Commands: atoms list
  257. CYANA Commands: atoms observable
  258. CYANA Commands: atoms select
  259. CYANA Commands: atoms set
  260. CYANA Commands: atoms stereo
  261. CYANA Commands: atoms swap
  262. CYANA Commands: calibrate
  263. CYANA Commands: couplings count
  264. CYANA Commands: couplings delete
  265. CYANA Commands: couplings make
  266. CYANA Commands: couplings select
  267. CYANA Commands: couplings set
  268. CYANA Commands: distances calculate
  269. CYANA Commands: distances check
  270. CYANA Commands: distances combine
  271. CYANA Commands: distances compare
  272. CYANA Commands: distances correct
  273. CYANA Commands: distances count
  274. CYANA Commands: distances delete
  275. CYANA Commands: distances expand
  276. CYANA Commands: distances falsify
  277. CYANA Commands: distances hbond
  278. CYANA Commands: distances make
  279. CYANA Commands: distances modify
  280. CYANA Commands: distances multiple
  281. CYANA Commands: distances select
  282. CYANA Commands: distances set
  283. CYANA Commands: distances short
  284. CYANA Commands: distances split
  285. CYANA Commands: distances stat
  286. CYANA Commands: distances stereoexpand
  287. CYANA Commands: distances unique
  288. CYANA Commands: distances vdw
  289. CYANA Commands: gradient
  290. CYANA Commands: grid aco
  291. CYANA Commands: grid correlate
  292. CYANA Commands: grid fragment
  293. CYANA Commands: grid memory
  294. CYANA Commands: grid search
  295. CYANA Commands: grid swap
  296. CYANA Commands: library check
  297. CYANA Commands: library mirror
  298. CYANA Commands: library new
  299. CYANA Commands: library remove
  300. CYANA Commands: library rename
  301. CYANA Commands: library replace
  302. CYANA Commands: md
  303. CYANA Commands: minimize
  304. CYANA Commands: molecules define
  305. CYANA Commands: molecules identity
  306. CYANA Commands: molecules symdist
  307. CYANA Commands: pcs axial
  308. CYANA Commands: pcs count
  309. CYANA Commands: pcs delete
  310. CYANA Commands: pcs list
  311. CYANA Commands: pcs make
  312. CYANA Commands: pcs rhombic
  313. CYANA Commands: pcs select
  314. CYANA Commands: pcs set
  315. CYANA Commands: peaks backcal
  316. CYANA Commands: peaks calibrate
  317. CYANA Commands: peaks count
  318. CYANA Commands: peaks create
  319. CYANA Commands: peaks delete
  320. CYANA Commands: peaks deviations
  321. CYANA Commands: peaks distance
  322. CYANA Commands: peaks filter
  323. CYANA Commands: peaks fit
  324. CYANA Commands: peaks protonize
  325. CYANA Commands: peaks select
  326. CYANA Commands: peaks set
  327. CYANA Commands: peaks simplecal
  328. CYANA Commands: peaks split
  329. CYANA Commands: peaks unassign
  330. CYANA Commands: peaks unique
  331. CYANA Commands: randomize
  332. CYANA Commands: rdc count
  333. CYANA Commands: rdc delete
  334. CYANA Commands: rdc distance
  335. CYANA Commands: rdc fittensor
  336. CYANA Commands: rdc list
  337. CYANA Commands: rdc make
  338. CYANA Commands: rdc select
  339. CYANA Commands: rdc set
  340. CYANA Commands: rdc tensor
  341. CYANA Commands: read aco
  342. CYANA Commands: read ang
  343. CYANA Commands: read bmrb
  344. CYANA Commands: read cco
  345. CYANA Commands: read cor
  346. CYANA Commands: read lib
  347. CYANA Commands: read lol
  348. CYANA Commands: read nmrview
  349. CYANA Commands: read pcs
  350. CYANA Commands: read pdb
  351. CYANA Commands: read peaks
  352. CYANA Commands: read prot
  353. CYANA Commands: read rdc
  354. CYANA Commands: read upl
  355. CYANA Commands: read xpk
  356. CYANA Commands: read xplor
  357. CYANA Commands: shifts adapt
  358. CYANA Commands: shifts assign
  359. CYANA Commands: shifts check
  360. CYANA Commands: shifts collapse
  361. CYANA Commands: shifts consolidate
  362. CYANA Commands: shifts converge
  363. CYANA Commands: shifts d2o
  364. CYANA Commands: shifts incomplete
  365. CYANA Commands: shifts initialize
  366. CYANA Commands: shifts missing
  367. CYANA Commands: shifts randomcoil
  368. CYANA Commands: shifts renumber
  369. CYANA Commands: shifts unusual
  370. CYANA Commands: structures clear
  371. CYANA Commands: structures copy
  372. CYANA Commands: structures hbonds
  373. CYANA Commands: structures insert
  374. CYANA Commands: structures list
  375. CYANA Commands: structures mean
  376. CYANA Commands: structures overlay
  377. CYANA Commands: structures secondary
  378. CYANA Commands: structures select
  379. CYANA Commands: structures sort
  380. CYANA Commands: structures swap
  381. CYANA Commands: structures violate
  382. CYANA Commands: write aco
  383. CYANA Commands: write ang
  384. CYANA Commands: write assign
  385. CYANA Commands: write bmrb
  386. CYANA Commands: write cco
  387. CYANA Commands: write cor
  388. CYANA Commands: write lib
  389. CYANA Commands: write lol
  390. CYANA Commands: write pcs
  391. CYANA Commands: write pdb
  392. CYANA Commands: write peaks
  393. CYANA Commands: write prot
  394. CYANA Commands: write rdc
  395. CYANA Commands: write seq
  396. CYANA Commands: write upl
  397. CYANA Commands: write xpk
  398. CYANA Function: acoviol
  399. CYANA Function: anam
  400. CYANA Function: anamlib
  401. CYANA Function: anamo
  402. CYANA Function: angle
  403. CYANA Function: anglelong
  404. CYANA Function: asel
  405. CYANA Function: atom
  406. CYANA Function: atomlong
  407. CYANA Function: bondangle
  408. CYANA Function: calconst
  409. CYANA Function: calscale
  410. CYANA Function: cco
  411. CYANA Function: coord
  412. CYANA Function: cstab
  413. CYANA Function: cyanadir
  414. CYANA Function: dcosel
  415. CYANA Function: derms
  416. CYANA Function: diastereotopic
  417. CYANA Function: dist
  418. CYANA Function: dmax
  419. CYANA Function: dmean
  420. CYANA Function: dnam
  421. CYANA Function: dnamlib
  422. CYANA Function: drms
  423. CYANA Function: dsel
  424. CYANA Function: dshift
  425. CYANA Function: dstddev
  426. CYANA Function: dval
  427. CYANA Function: ekin
  428. CYANA Function: ekmean
  429. CYANA Function: ekrms
  430. CYANA Function: element
  431. CYANA Function: emean
  432. CYANA Function: erms
  433. CYANA Function: functions
  434. CYANA Function: heavyatom
  435. CYANA Function: iacod
  436. CYANA Function: iar
  437. CYANA Function: iaunit
  438. CYANA Function: ibond
  439. CYANA Function: iccoa
  440. CYANA Function: ida
  441. CYANA Function: idcoa
  442. CYANA Function: idord
  443. CYANA Function: idr
  444. CYANA Function: ifira
  445. CYANA Function: ifird
  446. CYANA Function: indco
  447. CYANA Function: inpk
  448. CYANA Function: interval
  449. CYANA Function: intervals
  450. CYANA Function: ipa
  451. CYANA Function: ipel
  452. CYANA Function: iprev
  453. CYANA Function: irnum
  454. CYANA Function: istruct
  455. CYANA Function: lda
  456. CYANA Function: libdir
  457. CYANA Function: magnitude
  458. CYANA Function: matchangle
  459. CYANA Function: matchatom
  460. CYANA Function: na
  461. CYANA Function: naa
  462. CYANA Function: naco
  463. CYANA Function: narmsd
  464. CYANA Function: nassign
  465. CYANA Function: nbond
  466. CYANA Function: ncco
  467. CYANA Function: nconf
  468. CYANA Function: nd
  469. CYANA Function: ndcdis
  470. CYANA Function: ndco
  471. CYANA Function: ndcres
  472. CYANA Function: ndfree
  473. CYANA Function: ndim
  474. CYANA Function: nlevel
  475. CYANA Function: nlol
  476. CYANA Function: nmol
  477. CYANA Function: npcs
  478. CYANA Function: npeaks
  479. CYANA Function: npkl
  480. CYANA Function: nr
  481. CYANA Function: nrdc
  482. CYANA Function: nsel
  483. CYANA Function: nseldis
  484. CYANA Function: nshifts
  485. CYANA Function: nstruct
  486. CYANA Function: nstructall
  487. CYANA Function: numpro
  488. CYANA Function: nupl
  489. CYANA Function: orientations
  490. CYANA Function: pi
  491. CYANA Function: psel
  492. CYANA Function: pseudoatom
  493. CYANA Function: rad
  494. CYANA Function: rhombicity
  495. CYANA Function: rid
  496. CYANA Function: rmsdcurr
  497. CYANA Function: rmsdmax
  498. CYANA Function: rmsdmean
  499. CYANA Function: rmsdmin
  500. CYANA Function: rmsdpair

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