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  1. Break, exit, quit, return
  2. CANDID
  3. COCO
  4. CYANA 3.0 Reference Manual
  5. CYANA Command: angles count
  6. CYANA Command: angles delete
  7. CYANA Command: angles fix
  8. CYANA Command: angles flip
  9. CYANA Command: angles free
  10. CYANA Command: angles ramachandran
  11. CYANA Command: angles select
  12. CYANA Command: angles set
  13. CYANA Command: angles split
  14. CYANA Command: angstat clear
  15. CYANA Command: angstat list
  16. CYANA Command: angstat make
  17. CYANA Command: anneal
  18. CYANA Command: assign
  19. CYANA Command: atoms attach
  20. CYANA Command: atoms calibrate
  21. CYANA Command: atoms count
  22. CYANA Command: atoms glomsa
  23. CYANA Command: atoms list
  24. CYANA Command: atoms observable
  25. CYANA Command: atoms select
  26. CYANA Command: atoms set
  27. CYANA Command: atoms set protlev
  28. CYANA Command: atoms shifts
  29. CYANA Command: atoms stereo
  30. CYANA Command: atoms swap
  31. CYANA Command: atoms values
  32. CYANA Command: calibrate
  33. CYANA Command: couplings count
  34. CYANA Command: couplings delete
  35. CYANA Command: couplings make
  36. CYANA Command: couplings select
  37. CYANA Command: couplings set
  38. CYANA Command: distances calculate
  39. CYANA Command: distances check
  40. CYANA Command: distances combine
  41. CYANA Command: distances compare
  42. CYANA Command: distances correct
  43. CYANA Command: distances count
  44. CYANA Command: distances delete
  45. CYANA Command: distances expand
  46. CYANA Command: distances falsify
  47. CYANA Command: distances hbond
  48. CYANA Command: distances make
  49. CYANA Command: distances modify
  50. CYANA Command: distances multiple
  51. CYANA Command: distances select
  52. CYANA Command: distances set
  53. CYANA Command: distances short
  54. CYANA Command: distances split
  55. CYANA Command: distances stat
  56. CYANA Command: distances stereoexpand
  57. CYANA Command: distances unique
  58. CYANA Command: distances vdw
  59. CYANA Command: enoe avgExpVal
  60. CYANA Command: enoe buildup
  61. CYANA Command: enoe cross
  62. CYANA Command: enoe decay
  63. CYANA Command: enoe diag
  64. CYANA Command: enoe init
  65. CYANA Command: enoe intensities
  66. CYANA Command: enoe overview
  67. CYANA Command: enoe plotbup
  68. CYANA Command: enoe plotdec
  69. CYANA Command: enoe reff
  70. CYANA Command: enoe restraint
  71. CYANA Command: enoe sig
  72. CYANA Command: enoe spdcorr
  73. CYANA Command: enoe spindiff
  74. CYANA Command: enoe twospin
  75. CYANA Command: enoe values
  76. CYANA Command: gradient
  77. CYANA Command: grid aco
  78. CYANA Command: grid correlate
  79. CYANA Command: grid fragment
  80. CYANA Command: grid memory
  81. CYANA Command: grid search
  82. CYANA Command: grid swap
  83. CYANA Command: library check
  84. CYANA Command: library mirror
  85. CYANA Command: library new
  86. CYANA Command: library remove
  87. CYANA Command: library rename
  88. CYANA Command: library replace
  89. CYANA Command: md
  90. CYANA Command: minimize
  91. CYANA Command: molecules define
  92. CYANA Command: molecules identity
  93. CYANA Command: molecules symdist
  94. CYANA Command: pcs axial
  95. CYANA Command: pcs count
  96. CYANA Command: pcs delete
  97. CYANA Command: pcs list
  98. CYANA Command: pcs make
  99. CYANA Command: pcs rhombic
  100. CYANA Command: pcs select
  101. CYANA Command: pcs set
  102. CYANA Command: peaks backcal
  103. CYANA Command: peaks calibrate
  104. CYANA Command: peaks count
  105. CYANA Command: peaks create
  106. CYANA Command: peaks delete
  107. CYANA Command: peaks deviations
  108. CYANA Command: peaks distance
  109. CYANA Command: peaks filter
  110. CYANA Command: peaks fit
  111. CYANA Command: peaks protonize
  112. CYANA Command: peaks select
  113. CYANA Command: peaks set
  114. CYANA Command: peaks simplecal
  115. CYANA Command: peaks split
  116. CYANA Command: peaks unassign
  117. CYANA Command: peaks unique
  118. CYANA Command: randomize
  119. CYANA Command: rdc count
  120. CYANA Command: rdc delete
  121. CYANA Command: rdc distance
  122. CYANA Command: rdc fittensor
  123. CYANA Command: rdc list
  124. CYANA Command: rdc make
  125. CYANA Command: rdc select
  126. CYANA Command: rdc set
  127. CYANA Command: rdc tensor
  128. CYANA Command: read aco
  129. CYANA Command: read ang
  130. CYANA Command: read bmrb
  131. CYANA Command: read cco
  132. CYANA Command: read cor
  133. CYANA Command: read lib
  134. CYANA Command: read lol
  135. CYANA Command: read nmrview
  136. CYANA Command: read pcs
  137. CYANA Command: read pdb
  138. CYANA Command: read peaks
  139. CYANA Command: read prot
  140. CYANA Command: read rdc
  141. CYANA Command: read rho
  142. CYANA Command: read tab
  143. CYANA Command: read upl
  144. CYANA Command: read xpk
  145. CYANA Command: read xplor
  146. CYANA Command: shifts adapt
  147. CYANA Command: shifts assign
  148. CYANA Command: shifts check
  149. CYANA Command: shifts collapse
  150. CYANA Command: shifts consolidate
  151. CYANA Command: shifts converge
  152. CYANA Command: shifts d2o
  153. CYANA Command: shifts incomplete
  154. CYANA Command: shifts initialize
  155. CYANA Command: shifts missing
  156. CYANA Command: shifts randomcoil
  157. CYANA Command: shifts renumber
  158. CYANA Command: shifts unusual
  159. CYANA Command: structures clear
  160. CYANA Command: structures copy
  161. CYANA Command: structures hbonds
  162. CYANA Command: structures insert
  163. CYANA Command: structures list
  164. CYANA Command: structures mean
  165. CYANA Command: structures overlay
  166. CYANA Command: structures secondary
  167. CYANA Command: structures select
  168. CYANA Command: structures sort
  169. CYANA Command: structures swap
  170. CYANA Command: structures violate
  171. CYANA Command: write aco
  172. CYANA Command: write ang
  173. CYANA Command: write assign
  174. CYANA Command: write bmrb
  175. CYANA Command: write cco
  176. CYANA Command: write cor
  177. CYANA Command: write lib
  178. CYANA Command: write lol
  179. CYANA Command: write pcs
  180. CYANA Command: write pdb
  181. CYANA Command: write peaks
  182. CYANA Command: write prot
  183. CYANA Command: write rdc
  184. CYANA Command: write rho
  185. CYANA Command: write seq
  186. CYANA Command: write sparky
  187. CYANA Command: write upl
  188. CYANA Command: write xpk
  189. CYANA Commands
  190. CYANA Commands:
  191. CYANA Commands: angles count
  192. CYANA Commands: angles delete
  193. CYANA Commands: angles flip
  194. CYANA Commands: angles ramachandran
  195. CYANA Commands: angles select
  196. CYANA Commands: angles set
  197. CYANA Commands: angles split
  198. CYANA Commands: angstat clear
  199. CYANA Commands: angstat list
  200. CYANA Commands: angstat make
  201. CYANA Commands: assign
  202. CYANA Commands: atoms attach
  203. CYANA Commands: atoms calibrate
  204. CYANA Commands: atoms count
  205. CYANA Commands: atoms glomsa
  206. CYANA Commands: atoms list
  207. CYANA Commands: atoms observable
  208. CYANA Commands: atoms select
  209. CYANA Commands: atoms set
  210. CYANA Commands: atoms stereo
  211. CYANA Commands: atoms swap
  212. CYANA Commands: calibrate
  213. CYANA Commands: couplings count
  214. CYANA Commands: couplings delete
  215. CYANA Commands: couplings make
  216. CYANA Commands: couplings select
  217. CYANA Commands: couplings set
  218. CYANA Commands: distances calculate
  219. CYANA Commands: distances check
  220. CYANA Commands: distances combine
  221. CYANA Commands: distances compare
  222. CYANA Commands: distances correct
  223. CYANA Commands: distances count
  224. CYANA Commands: distances delete
  225. CYANA Commands: distances expand
  226. CYANA Commands: distances falsify
  227. CYANA Commands: distances hbond
  228. CYANA Commands: distances make
  229. CYANA Commands: distances modify
  230. CYANA Commands: distances multiple
  231. CYANA Commands: distances select
  232. CYANA Commands: distances set
  233. CYANA Commands: distances short
  234. CYANA Commands: distances split
  235. CYANA Commands: distances stat
  236. CYANA Commands: distances stereoexpand
  237. CYANA Commands: distances unique
  238. CYANA Commands: distances vdw
  239. CYANA Commands: gradient
  240. CYANA Commands: grid aco
  241. CYANA Commands: grid correlate
  242. CYANA Commands: grid fragment
  243. CYANA Commands: grid memory
  244. CYANA Commands: grid search
  245. CYANA Commands: grid swap
  246. CYANA Commands: library check
  247. CYANA Commands: library mirror
  248. CYANA Commands: library new
  249. CYANA Commands: library remove
  250. CYANA Commands: library rename
  251. CYANA Commands: library replace
  252. CYANA Commands: md
  253. CYANA Commands: minimize
  254. CYANA Commands: molecules define
  255. CYANA Commands: molecules identity
  256. CYANA Commands: molecules symdist
  257. CYANA Commands: pcs axial
  258. CYANA Commands: pcs count
  259. CYANA Commands: pcs delete
  260. CYANA Commands: pcs list
  261. CYANA Commands: pcs make
  262. CYANA Commands: pcs rhombic
  263. CYANA Commands: pcs select
  264. CYANA Commands: pcs set
  265. CYANA Commands: peaks backcal
  266. CYANA Commands: peaks calibrate
  267. CYANA Commands: peaks count
  268. CYANA Commands: peaks create
  269. CYANA Commands: peaks delete
  270. CYANA Commands: peaks deviations
  271. CYANA Commands: peaks distance
  272. CYANA Commands: peaks filter
  273. CYANA Commands: peaks fit
  274. CYANA Commands: peaks protonize
  275. CYANA Commands: peaks select
  276. CYANA Commands: peaks set
  277. CYANA Commands: peaks simplecal
  278. CYANA Commands: peaks split
  279. CYANA Commands: peaks unassign
  280. CYANA Commands: peaks unique
  281. CYANA Commands: randomize
  282. CYANA Commands: rdc count
  283. CYANA Commands: rdc delete
  284. CYANA Commands: rdc distance
  285. CYANA Commands: rdc fittensor
  286. CYANA Commands: rdc list
  287. CYANA Commands: rdc make
  288. CYANA Commands: rdc select
  289. CYANA Commands: rdc set
  290. CYANA Commands: rdc tensor
  291. CYANA Commands: read aco
  292. CYANA Commands: read ang
  293. CYANA Commands: read bmrb
  294. CYANA Commands: read cco
  295. CYANA Commands: read cor
  296. CYANA Commands: read lib
  297. CYANA Commands: read lol
  298. CYANA Commands: read nmrview
  299. CYANA Commands: read pcs
  300. CYANA Commands: read pdb
  301. CYANA Commands: read peaks
  302. CYANA Commands: read prot
  303. CYANA Commands: read rdc
  304. CYANA Commands: read upl
  305. CYANA Commands: read xpk
  306. CYANA Commands: read xplor
  307. CYANA Commands: shifts adapt
  308. CYANA Commands: shifts assign
  309. CYANA Commands: shifts check
  310. CYANA Commands: shifts collapse
  311. CYANA Commands: shifts consolidate
  312. CYANA Commands: shifts converge
  313. CYANA Commands: shifts d2o
  314. CYANA Commands: shifts incomplete
  315. CYANA Commands: shifts initialize
  316. CYANA Commands: shifts missing
  317. CYANA Commands: shifts randomcoil
  318. CYANA Commands: shifts renumber
  319. CYANA Commands: shifts unusual
  320. CYANA Commands: structures clear
  321. CYANA Commands: structures copy
  322. CYANA Commands: structures hbonds
  323. CYANA Commands: structures insert
  324. CYANA Commands: structures list
  325. CYANA Commands: structures mean
  326. CYANA Commands: structures overlay
  327. CYANA Commands: structures secondary
  328. CYANA Commands: structures select
  329. CYANA Commands: structures sort
  330. CYANA Commands: structures swap
  331. CYANA Commands: structures violate
  332. CYANA Commands: write aco
  333. CYANA Commands: write ang
  334. CYANA Commands: write assign
  335. CYANA Commands: write bmrb
  336. CYANA Commands: write cco
  337. CYANA Commands: write cor
  338. CYANA Commands: write lib
  339. CYANA Commands: write lol
  340. CYANA Commands: write pcs
  341. CYANA Commands: write pdb
  342. CYANA Commands: write peaks
  343. CYANA Commands: write prot
  344. CYANA Commands: write rdc
  345. CYANA Commands: write seq
  346. CYANA Commands: write upl
  347. CYANA Commands: write xpk
  348. CYANA Function: acoviol
  349. CYANA Function: anam
  350. CYANA Function: anamlib
  351. CYANA Function: anamo
  352. CYANA Function: angle
  353. CYANA Function: anglelong
  354. CYANA Function: asel
  355. CYANA Function: atom
  356. CYANA Function: atomlong
  357. CYANA Function: bondangle
  358. CYANA Function: calconst
  359. CYANA Function: calscale
  360. CYANA Function: cco
  361. CYANA Function: coord
  362. CYANA Function: cstab
  363. CYANA Function: cyanadir
  364. CYANA Function: dcosel
  365. CYANA Function: derms
  366. CYANA Function: diastereotopic
  367. CYANA Function: dist
  368. CYANA Function: dmax
  369. CYANA Function: dmean
  370. CYANA Function: dnam
  371. CYANA Function: dnamlib
  372. CYANA Function: drms
  373. CYANA Function: dsel
  374. CYANA Function: dshift
  375. CYANA Function: dstddev
  376. CYANA Function: dval
  377. CYANA Function: ekin
  378. CYANA Function: ekmean
  379. CYANA Function: ekrms
  380. CYANA Function: element
  381. CYANA Function: emean
  382. CYANA Function: erms
  383. CYANA Function: functions
  384. CYANA Function: heavyatom
  385. CYANA Function: iacod
  386. CYANA Function: iar
  387. CYANA Function: iaunit
  388. CYANA Function: ibond
  389. CYANA Function: iccoa
  390. CYANA Function: ida
  391. CYANA Function: idcoa
  392. CYANA Function: idord
  393. CYANA Function: idr
  394. CYANA Function: ifira
  395. CYANA Function: ifird
  396. CYANA Function: indco
  397. CYANA Function: inpk
  398. CYANA Function: interval
  399. CYANA Function: intervals
  400. CYANA Function: ipa
  401. CYANA Function: ipel
  402. CYANA Function: iprev
  403. CYANA Function: irnum
  404. CYANA Function: istruct
  405. CYANA Function: lda
  406. CYANA Function: libdir
  407. CYANA Function: magnitude
  408. CYANA Function: matchangle
  409. CYANA Function: matchatom
  410. CYANA Function: na
  411. CYANA Function: naa
  412. CYANA Function: naco
  413. CYANA Function: narmsd
  414. CYANA Function: nassign
  415. CYANA Function: nbond
  416. CYANA Function: ncco
  417. CYANA Function: nconf
  418. CYANA Function: nd
  419. CYANA Function: ndcdis
  420. CYANA Function: ndco
  421. CYANA Function: ndcres
  422. CYANA Function: ndfree
  423. CYANA Function: ndim
  424. CYANA Function: nlevel
  425. CYANA Function: nlol
  426. CYANA Function: nmol
  427. CYANA Function: npcs
  428. CYANA Function: npeaks
  429. CYANA Function: npkl
  430. CYANA Function: nr
  431. CYANA Function: nrdc
  432. CYANA Function: nsel
  433. CYANA Function: nseldis
  434. CYANA Function: nshifts
  435. CYANA Function: nstruct
  436. CYANA Function: nstructall
  437. CYANA Function: numpro
  438. CYANA Function: nupl
  439. CYANA Function: orientations
  440. CYANA Function: pi
  441. CYANA Function: psel
  442. CYANA Function: pseudoatom
  443. CYANA Function: rad
  444. CYANA Function: rhombicity
  445. CYANA Function: rid
  446. CYANA Function: rmsdcurr
  447. CYANA Function: rmsdmax
  448. CYANA Function: rmsdmean
  449. CYANA Function: rmsdmin
  450. CYANA Function: rmsdpair
  451. CYANA Function: rmsdstd
  452. CYANA Function: rnam
  453. CYANA Function: rnamlib
  454. CYANA Function: rnum
  455. CYANA Function: seldis
  456. CYANA Function: selected
  457. CYANA Function: selrange
  458. CYANA Function: selrangeshort
  459. CYANA Function: shift
  460. CYANA Function: stereopartner
  461. CYANA Function: tf
  462. CYANA Function: tfcalc
  463. CYANA Function: tfmax
  464. CYANA Function: tfmin
  465. CYANA Function: tfres
  466. CYANA Function: timestep
  467. CYANA Function: tolcco
  468. CYANA Function: tor
  469. CYANA Functions: acoviol
  470. CYANA Functions: anam
  471. CYANA Functions: anamlib
  472. CYANA Functions: angle
  473. CYANA Functions: anglelong
  474. CYANA Functions: atom
  475. CYANA Functions: atomlong
  476. CYANA Functions: bondangle
  477. CYANA Functions: calconst
  478. CYANA Functions: calscale
  479. CYANA Functions: cco
  480. CYANA Functions: coord
  481. CYANA Functions: cstab
  482. CYANA Functions: cyanadir
  483. CYANA Functions: dcosel
  484. CYANA Functions: derms
  485. CYANA Functions: diastereotopic
  486. CYANA Functions: dist
  487. CYANA Functions: dmax
  488. CYANA Functions: dmean
  489. CYANA Functions: dnam
  490. CYANA Functions: dnamlib
  491. CYANA Functions: drms
  492. CYANA Functions: dshift
  493. CYANA Functions: dstddev
  494. CYANA Functions: dval
  495. CYANA Functions: ekin
  496. CYANA Functions: ekmean
  497. CYANA Functions: ekrms
  498. CYANA Functions: element
  499. CYANA Functions: emean
  500. CYANA Functions: erms

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